LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_399.5wLII_11277_134
Total number of 3D structures: 65
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1cuk_A
190
208
166
1.45
28.31
78.028
10.724
T P
1hjp_A
186
208
163
1.37
26.99
76.533
11.075
T P
2h5x_A
183
208
158
1.53
28.48
73.262
9.713
T P
1bvs_A
183
208
159
1.72
23.90
69.541
8.756
T P
1d8l_A
140
208
137
0.85
31.39
64.564
14.460
T P
1ixr_B
191
208
133
1.70
30.83
58.843
7.408
T P
2bgw_A
219
208
67
2.00
22.39
27.616
3.191
T P
2a1j_B
79
208
62
1.78
14.52
26.561
3.300
T P
2bhn_A
211
208
60
1.86
26.67
26.539
3.066
T P
1dgt_B
660
208
73
2.36
19.18
26.502
2.967
T P
1x2i_A
68
208
59
1.92
23.73
25.812
2.918
T P
2owo_A
586
208
66
2.23
16.67
25.551
2.837
T P
1z00_A
84
208
60
2.03
18.33
25.126
2.816
T P
2csd_A
516
208
61
2.06
22.95
24.781
2.826
T P
2w9m_B
559
208
69
2.26
28.99
24.587
2.921
T P
2i1q_A
311
208
60
2.05
23.33
24.493
2.796
T P
1v9p_A
584
208
73
2.71
17.81
23.034
2.597
T P
2duy_A
65
208
50
1.87
30.00
21.922
2.538
T P
1ixs_A
50
208
47
1.63
14.89
21.552
2.719
T P
2zj8_A
700
208
67
2.61
8.96
21.521
2.474
T P
3c1y_A
349
208
67
2.49
8.96
21.089
2.590
T P
1kft_A
56
208
48
2.17
18.75
19.220
2.117
T P
1wpw_A
336
208
59
2.61
8.47
18.977
2.175
T P
2va8_B
695
208
62
2.94
8.06
18.810
2.037
T P
2csb_A
517
208
54
2.42
3.70
18.252
2.144
T P
2nrt_A
217
208
54
2.56
9.26
18.090
2.026
T P
2dpj_A
373
208
58
2.75
3.45
18.061
2.037
T P
2alz_A
373
208
59
2.92
3.39
18.044
1.954
T P
2p6r_A
683
208
56
2.72
3.57
17.936
1.983
T P
1ord_A
730
208
52
2.81
11.54
17.442
1.787
T P
1t3n_A
388
208
55
3.01
9.09
17.114
1.770
T P
3c5f_A
326
208
58
2.68
8.62
16.911
2.084
T P
1kej_A
357
208
47
2.44
10.64
16.774
1.851
T P
1dk2_A
86
208
52
2.39
5.77
16.447
2.088
T P
3c65_A
152
208
50
2.57
14.00
16.232
1.875
T P
1nzp_A
86
208
49
2.53
8.16
16.103
1.865
T P
2fmp_A
326
208
53
2.86
9.43
16.076
1.793
T P
1huo_A
325
208
51
2.73
7.84
16.000
1.803
T P
2ihm_B
336
208
50
2.42
6.00
15.974
1.988
T P
1bno_A
87
208
49
2.74
10.20
15.786
1.727
T P
1rzt_A
327
208
48
2.58
2.08
15.744
1.791
T P
2gbd_A
230
208
48
2.67
10.42
15.511
1.733
T P
1cf6_A
325
208
45
2.52
8.89
15.105
1.717
T P
2pfn_A
325
208
47
2.75
4.26
15.095
1.648
T P
1jms_A
360
208
47
2.56
10.64
15.091
1.764
T P
3c5g_B
329
208
44
2.39
2.27
14.738
1.764
T P
2z43_B
290
208
45
2.60
8.89
14.726
1.669
T P
2f1j_A
299
208
45
2.63
15.56
14.660
1.651
T P
2edu_A
98
208
40
2.44
20.00
14.539
1.577
T P
2nrr_A
139
208
47
2.70
10.64
14.477
1.679
T P
1rpl_A
241
208
44
2.47
11.36
14.464
1.709
T P
2bcq_A
324
208
42
2.56
4.76
14.366
1.581
T P
1pzn_A
300
208
44
2.70
11.36
14.146
1.572
T P
2bke_A
293
208
41
2.50
2.44
14.056
1.576
T P
1vdd_A
199
208
48
2.83
8.33
13.826
1.639
T P
3e1s_A
517
208
43
2.77
13.95
13.741
1.501
T P
2v1c_A
198
208
49
2.82
8.16
13.725
1.678
T P
1jaj_A
174
208
43
2.84
4.65
13.456
1.462
T P
1jn3_A
242
208
40
2.63
5.00
13.033
1.467
T P
1a6d_A
503
208
41
2.73
9.76
12.996
1.448
T P
1zq1_C
508
208
35
2.75
17.14
12.362
1.226
T P
1bpb_A
242
208
38
2.60
5.26
12.341
1.406
T P
2van_A
240
208
35
2.59
14.29
11.645
1.299
T P
1taq_A
807
208
34
2.86
2.94
10.973
1.149
T P
1bgx_T
828
208
31
2.60
6.45
10.777
1.149
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]