LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_4.5wLII_08970_1
Total number of 3D structures: 88
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1m70_A
190
199
184
0.42
16.85
92.193
35.408
T P
1h1o_A
172
199
155
1.38
19.35
74.658
10.505
T P
1fcd_C
174
199
154
1.93
13.64
68.747
7.594
T P
1cno_G
87
199
82
1.17
20.73
40.128
6.478
T P
1c53_A
79
199
74
1.40
13.51
35.601
4.937
T P
1dvh_A
79
199
71
1.45
19.72
34.960
4.581
T P
2dvh_A
79
199
74
1.56
17.57
34.711
4.445
T P
1e2r_B
543
199
77
2.00
16.88
33.345
3.673
T P
1hzu_A
521
199
76
2.02
22.37
32.939
3.588
T P
1qks_A
559
199
73
2.16
20.55
31.030
3.230
T P
1hj5_A
559
199
74
2.18
18.92
30.779
3.246
T P
1hzv_A
514
199
73
2.07
26.03
30.509
3.359
T P
1e08_E
78
199
75
2.07
18.67
30.270
3.455
T P
1gq1_A
559
199
71
2.14
19.72
29.455
3.163
T P
1kv9_A
664
199
83
2.35
15.66
28.991
3.386
T P
1yiq_A
684
199
78
2.25
10.26
28.710
3.320
T P
1nir_B
539
199
75
2.25
25.33
28.551
3.190
T P
2c1v_A
335
199
85
2.52
7.06
28.512
3.241
T P
2vhd_A
323
199
82
2.49
10.98
28.178
3.165
T P
1mg2_D
147
199
72
2.01
15.28
28.097
3.417
T P
2gc4_D
147
199
72
1.93
15.28
28.041
3.548
T P
1iqc_A
308
199
79
2.41
10.13
27.773
3.152
T P
2d0w_A
168
199
72
2.02
16.67
27.652
3.396
T P
1kb0_A
669
199
77
2.26
15.58
27.560
3.265
T P
2c1d_A
264
199
79
2.31
11.39
27.495
3.284
T P
1zzh_B
308
199
78
2.36
12.82
27.467
3.170
T P
1cyj_A
90
199
70
2.00
17.14
27.182
3.337
T P
2v07_A
98
199
68
1.93
13.24
26.921
3.349
T P
1gdv_A
85
199
70
2.06
20.00
26.830
3.244
T P
1h32_A
261
199
77
2.36
10.39
26.681
3.134
T P
2ce0_A
99
199
68
1.95
17.65
26.536
3.311
T P
1umm_A
149
199
71
2.09
8.45
26.398
3.247
T P
1w2l_A
97
199
69
1.97
20.29
26.267
3.339
T P
1nml_A
316
199
76
2.55
19.74
26.170
2.871
T P
1ls9_A
91
199
70
2.00
17.14
26.130
3.334
T P
1f1f_A
88
199
66
1.99
18.18
25.884
3.164
T P
2zbo_A
86
199
69
2.05
15.94
25.823
3.208
T P
1dt1_A
129
199
68
2.11
14.71
25.806
3.083
T P
2v08_A
84
199
68
2.06
19.12
25.719
3.149
T P
1c52_A
131
199
67
2.20
14.93
25.328
2.908
T P
1c6s_A
87
199
65
2.11
18.46
25.266
2.938
T P
3cp5_A
116
199
73
2.25
9.59
25.182
3.111
T P
1kib_A
89
199
67
2.02
17.91
25.162
3.154
T P
1ctj_A
89
199
68
2.14
19.12
25.095
3.041
T P
2dge_A
102
199
67
1.94
14.93
25.070
3.290
T P
2c1d_B
137
199
69
2.23
18.84
24.794
2.959
T P
1c6r_A
88
199
65
2.09
20.00
24.598
2.961
T P
2b4z_A
104
199
65
2.10
15.38
24.354
2.956
T P
1ccr_A
111
199
65
2.12
15.38
24.223
2.924
T P
2b0z_B
108
199
64
2.08
18.75
24.174
2.934
T P
1foc_A
128
199
63
1.89
20.63
24.127
3.167
T P
1wej_F
104
199
66
2.22
13.64
24.123
2.840
T P
2ycc_A
108
199
65
2.17
16.92
24.040
2.868
T P
1yeb_A
108
199
62
2.06
16.13
23.923
2.866
T P
1irv_A
108
199
65
2.15
16.92
23.901
2.893
T P
1csv_A
108
199
65
2.14
15.38
23.898
2.907
T P
1i54_A
103
199
64
2.08
15.62
23.883
2.933
T P
3cx5_W
108
199
64
2.14
17.19
23.849
2.851
T P
1cyc_A
103
199
66
2.13
19.70
23.806
2.958
T P
1raq_A
108
199
64
2.16
17.19
23.654
2.833
T P
2b11_B
108
199
65
2.24
16.92
23.579
2.776
T P
1chh_A
108
199
64
2.18
17.19
23.494
2.806
T P
1crh_A
108
199
64
2.13
17.19
23.484
2.871
T P
1cri_A
108
199
63
2.18
17.46
23.478
2.766
T P
1wve_C
75
199
62
2.00
25.81
23.419
2.958
T P
1s6v_B
108
199
65
2.22
16.92
23.415
2.801
T P
1csu_A
108
199
64
2.16
17.19
23.413
2.829
T P
2aiu_A
104
199
63
2.19
12.70
23.407
2.756
T P
1chj_A
108
199
63
2.12
17.46
23.386
2.836
T P
2b12_B
108
199
63
2.12
17.46
23.378
2.836
T P
1cig_A
108
199
65
2.20
16.92
23.373
2.830
T P
1irw_A
108
199
64
2.22
17.19
23.284
2.753
T P
1ctz_A
108
199
62
2.07
17.74
23.284
2.853
T P
2fwl_A
129
199
63
2.30
14.29
23.275
2.621
T P
1fhb_A
108
199
65
2.38
15.38
23.247
2.616
T P
1csw_A
108
199
63
2.09
15.87
23.240
2.874
T P
1ycc_A
108
199
64
2.21
17.19
23.005
2.768
T P
2jqr_A
108
199
64
2.21
17.19
23.005
2.768
T P
1rap_A
108
199
66
2.34
9.09
22.997
2.702
T P
1csx_A
108
199
62
2.00
17.74
22.995
2.954
T P
2bcn_B
108
199
63
2.24
11.11
22.772
2.688
T P
1yfc_A
108
199
65
2.34
18.46
22.710
2.665
T P
1chi_A
108
199
66
2.43
9.09
22.280
2.612
T P
1j3s_A
104
199
62
2.22
12.90
22.171
2.674
T P
2jti_B
103
199
60
2.11
16.67
22.111
2.710
T P
1crg_A
108
199
62
2.23
14.52
21.927
2.660
T P
2b10_B
108
199
59
2.28
18.64
21.080
2.477
T P
1lms_A
95
199
45
2.51
8.89
15.752
1.722
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]