LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_40.5wLII_10850_11
Total number of 3D structures: 34
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3dwk_C
623
199
122
1.81
10.66
55.417
6.400
T P
2olv_B
618
199
102
1.62
10.78
47.730
5.939
T P
2v2f_F
366
199
87
2.10
8.05
36.936
3.956
T P
2c5w_B
385
199
90
2.15
11.11
35.995
3.993
T P
2zc6_B
384
199
89
2.10
10.11
35.632
4.040
T P
2c6w_B
384
199
90
2.19
11.11
35.537
3.928
T P
2bg1_A
455
199
81
1.83
7.41
34.948
4.194
T P
2fff_B
453
199
80
1.88
7.50
33.102
4.042
T P
2uwx_A
468
199
67
1.92
7.46
29.797
3.324
T P
3equ_A
429
199
82
2.30
8.54
29.412
3.417
T P
2uwy_A
469
199
66
1.97
9.09
29.140
3.195
T P
3eqv_A
443
199
82
2.32
12.20
28.566
3.383
T P
1h6k_C
733
199
57
2.65
3.51
19.158
2.073
T P
1bg1_A
559
199
58
2.86
8.62
18.607
1.958
T P
2wb7_A
525
199
56
2.60
7.14
17.931
2.073
T P
2hko_A
647
199
53
2.77
7.55
17.652
1.845
T P
2h94_A
647
199
49
2.83
4.08
17.379
1.675
T P
2z3y_A
643
199
51
2.77
1.96
16.954
1.776
T P
2dw4_A
634
199
49
2.65
0.00
16.776
1.781
T P
1qvr_A
803
199
49
2.64
8.16
16.124
1.789
T P
2b5u_A
470
199
47
2.72
8.51
15.623
1.669
T P
2iw5_A
666
199
45
2.86
6.67
14.851
1.522
T P
1lrz_A
400
199
43
2.80
11.63
14.778
1.483
T P
2v1d_A
666
199
42
2.57
7.14
14.021
1.572
T P
1f5n_A
570
199
40
2.70
5.00
13.703
1.430
T P
1jch_A
468
199
39
2.73
10.26
13.587
1.376
T P
1c1g_A
284
199
38
2.52
2.63
13.332
1.449
T P
1deq_A
180
199
37
2.45
8.11
12.627
1.452
T P
2v71_A
160
199
34
2.46
0.00
12.029
1.328
T P
2fxo_A
129
199
32
2.36
18.75
11.981
1.299
T P
2efr_A
155
199
33
2.62
6.06
11.920
1.212
T P
2fxm_A
126
199
32
2.64
9.38
11.734
1.167
T P
2oqo_A
181
199
29
2.59
3.45
11.213
1.078
T P
1ha0_A
494
199
29
2.85
0.00
10.483
0.983
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]