LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_401.5wLII_11277_137
Total number of 3D structures: 68
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1yg6_A
193
212
177
0.83
17.51
82.322
19.071
T P
1yg8_A
179
212
173
0.87
17.92
80.584
17.849
T P
1tg6_E
196
212
173
0.95
16.76
80.000
16.423
T P
2zl2_A
174
212
170
0.78
15.29
79.247
19.256
T P
2zl4_A
173
212
169
0.82
14.79
78.668
18.341
T P
1y7o_B
178
212
164
1.15
20.73
75.867
13.084
T P
2c8t_A
171
212
163
1.29
15.95
73.827
11.706
T P
2cby_D
171
212
163
1.27
16.56
73.755
11.934
T P
2ce3_E
169
212
161
1.27
16.15
72.900
11.744
T P
2f6i_C
183
212
157
1.22
10.19
71.332
11.882
T P
3bez_D
479
212
156
1.83
18.59
66.259
8.085
T P
3bf0_C
478
212
155
1.85
19.35
63.633
7.934
T P
2iex_A
253
212
137
1.81
13.87
59.016
7.183
T P
2gtr_A
258
212
134
1.82
18.66
57.091
6.994
T P
1q52_B
279
212
136
1.91
12.50
56.902
6.755
T P
2hw5_A
260
212
130
1.79
15.38
56.288
6.864
T P
1xx4_A
254
212
137
1.89
13.14
56.225
6.885
T P
1nzy_B
269
212
134
1.86
17.91
55.809
6.841
T P
2ej5_B
251
212
135
1.84
15.56
55.538
6.959
T P
1ef8_A
256
212
136
1.76
10.29
54.664
7.308
T P
2fbm_A
251
212
137
1.88
15.33
53.271
6.902
T P
3bpp_A
216
212
138
1.88
23.91
53.199
6.967
T P
1nzy_A
269
212
134
1.85
17.16
52.985
6.859
T P
1jxz_B
269
212
133
1.92
16.54
52.125
6.572
T P
2uzf_A
260
212
138
1.86
13.77
52.083
7.040
T P
1rjm_B
240
212
135
1.93
12.59
51.831
6.650
T P
2vx2_A
256
212
137
1.94
13.87
51.812
6.703
T P
2a7k_C
238
212
135
1.95
14.07
51.683
6.573
T P
1mj3_A
258
212
131
1.87
15.27
51.286
6.664
T P
2np9_A
423
212
135
1.89
13.33
51.281
6.769
T P
2fw2_F
260
212
136
1.87
16.18
51.253
6.921
T P
3fdu_A
248
212
134
1.93
9.70
51.202
6.604
T P
2ppy_A
264
212
133
1.76
11.28
50.544
7.153
T P
2vsu_C
251
212
134
1.92
14.18
50.113
6.627
T P
2deo_B
200
212
132
1.97
22.73
49.920
6.364
T P
1on3_E
521
212
116
1.80
10.34
49.880
6.097
T P
2vsu_F
245
212
134
1.96
11.94
49.807
6.521
T P
2j5i_I
245
212
134
2.01
13.43
49.673
6.344
T P
1ey3_A
258
212
130
1.89
16.15
49.671
6.534
T P
2j5i_D
247
212
133
1.95
13.53
49.473
6.503
T P
2j5i_A
247
212
134
1.97
13.43
49.414
6.459
T P
2vss_E
240
212
132
1.92
13.64
49.337
6.550
T P
2vsu_B
247
212
134
2.00
12.69
49.273
6.378
T P
1vrg_A
515
212
118
1.93
8.47
49.272
5.822
T P
2vsu_E
245
212
134
2.01
12.69
49.081
6.356
T P
2vss_F
246
212
132
1.98
12.88
48.998
6.354
T P
2dub_D
257
212
130
1.93
16.15
48.875
6.418
T P
1wdk_B
711
212
134
2.02
14.93
48.868
6.334
T P
1hzd_A
266
212
132
2.04
13.64
47.689
6.180
T P
2pbp_A
255
212
129
1.96
18.60
46.979
6.272
T P
3g64_A
275
212
134
2.05
13.43
46.927
6.228
T P
1uiy_A
253
212
130
1.78
15.38
46.505
6.928
T P
1dci_A
275
212
131
1.91
10.69
46.146
6.504
T P
1sg4_B
258
212
138
2.07
10.87
46.032
6.366
T P
2vre_A
272
212
132
1.98
9.85
45.964
6.342
T P
2f9i_A
309
212
119
1.94
15.97
45.885
5.836
T P
2f9y_A
301
212
116
1.90
16.38
45.463
5.811
T P
2f6q_B
252
212
133
1.99
12.78
45.272
6.361
T P
1szo_D
251
212
127
2.18
9.45
44.657
5.566
T P
3bpt_A
362
212
134
2.11
6.72
44.194
6.074
T P
1x0u_A
518
212
117
2.09
9.40
43.537
5.347
T P
1o8u_A
249
212
131
2.22
8.40
42.458
5.649
T P
2j5g_D
249
212
131
2.35
12.98
41.422
5.346
T P
2j5g_B
249
212
128
2.31
14.06
41.126
5.302
T P
1iq8_A
577
212
87
2.40
6.90
27.185
3.476
T P
2scu_B
385
212
71
2.49
12.68
22.848
2.738
T P
3d1l_B
259
212
62
2.60
9.68
18.845
2.300
T P
2csu_A
435
212
55
2.73
3.64
16.621
1.946
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]