LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_407.5wLII_11277_147
Total number of 3D structures: 54
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2eix_A |
243 |
229 |
224 |
0.77 |
20.54 |
96.704 |
25.814 |
T P |
1umk_A |
271 |
229 |
224 |
1.22 |
19.64 |
93.932 |
16.956 |
T P |
1qx4_A |
264 |
229 |
221 |
1.37 |
19.91 |
91.632 |
15.011 |
T P |
2cnd_A |
260 |
229 |
221 |
1.44 |
21.72 |
90.650 |
14.345 |
T P |
1i7p_A |
272 |
229 |
224 |
1.60 |
20.09 |
90.525 |
13.140 |
T P |
1cne_A |
260 |
229 |
220 |
1.52 |
21.36 |
89.211 |
13.586 |
T P |
1ndh_A |
270 |
229 |
217 |
1.59 |
19.82 |
88.053 |
12.860 |
T P |
2r6h_C |
289 |
229 |
207 |
2.12 |
21.26 |
66.744 |
9.314 |
T P |
1krh_A |
337 |
229 |
202 |
2.10 |
22.77 |
65.728 |
9.163 |
T P |
1qfj_A |
226 |
229 |
196 |
2.07 |
20.92 |
64.343 |
9.049 |
T P |
2rc5_A |
306 |
229 |
200 |
2.24 |
16.50 |
64.087 |
8.530 |
T P |
3fpk_A |
247 |
229 |
195 |
1.99 |
20.51 |
63.908 |
9.320 |
T P |
1bx1_A |
296 |
229 |
197 |
2.15 |
19.80 |
63.576 |
8.760 |
T P |
1fnb_A |
296 |
229 |
196 |
2.16 |
21.94 |
63.230 |
8.667 |
T P |
1gvh_A |
396 |
229 |
194 |
2.17 |
12.37 |
62.998 |
8.543 |
T P |
1gaw_B |
305 |
229 |
198 |
2.29 |
21.72 |
62.995 |
8.289 |
T P |
2b5o_A |
292 |
229 |
197 |
2.15 |
19.80 |
62.586 |
8.760 |
T P |
1bqe_A |
295 |
229 |
194 |
2.16 |
19.59 |
62.408 |
8.569 |
T P |
1e62_A |
295 |
229 |
196 |
2.20 |
19.39 |
62.141 |
8.516 |
T P |
1qga_A |
308 |
229 |
198 |
2.31 |
19.70 |
62.102 |
8.209 |
T P |
1qfz_A |
308 |
229 |
198 |
2.32 |
20.20 |
62.049 |
8.186 |
T P |
1fb3_A |
296 |
229 |
196 |
2.18 |
21.94 |
61.780 |
8.612 |
T P |
1bjk_A |
295 |
229 |
197 |
2.26 |
20.30 |
61.778 |
8.349 |
T P |
1fdr_A |
244 |
229 |
195 |
2.00 |
20.51 |
61.768 |
9.290 |
T P |
1e64_A |
295 |
229 |
192 |
2.15 |
19.79 |
61.726 |
8.548 |
T P |
1qg0_A |
296 |
229 |
195 |
2.19 |
20.00 |
61.191 |
8.506 |
T P |
1ddg_A |
374 |
229 |
182 |
2.04 |
18.13 |
60.511 |
8.492 |
T P |
1e63_A |
295 |
229 |
196 |
2.22 |
19.90 |
60.293 |
8.433 |
T P |
1qgz_A |
295 |
229 |
192 |
2.17 |
19.27 |
60.026 |
8.475 |
T P |
1que_A |
303 |
229 |
194 |
2.19 |
19.59 |
59.903 |
8.464 |
T P |
1ogj_A |
295 |
229 |
191 |
2.16 |
19.90 |
59.806 |
8.470 |
T P |
1h85_A |
295 |
229 |
192 |
2.19 |
20.83 |
59.696 |
8.389 |
T P |
1qh0_A |
295 |
229 |
192 |
2.20 |
19.79 |
59.476 |
8.343 |
T P |
1b2r_A |
295 |
229 |
190 |
2.17 |
20.00 |
59.436 |
8.360 |
T P |
1gr1_A |
295 |
229 |
191 |
2.20 |
19.90 |
59.433 |
8.312 |
T P |
1ogi_A |
295 |
229 |
192 |
2.19 |
18.75 |
59.430 |
8.378 |
T P |
2bsa_A |
295 |
229 |
193 |
2.23 |
20.21 |
59.402 |
8.296 |
T P |
1go2_A |
295 |
229 |
190 |
2.16 |
20.00 |
59.383 |
8.403 |
T P |
2bmw_A |
295 |
229 |
191 |
2.19 |
19.90 |
59.373 |
8.344 |
T P |
1gjr_A |
295 |
229 |
191 |
2.23 |
20.94 |
59.348 |
8.208 |
T P |
1ewy_A |
303 |
229 |
189 |
2.15 |
20.63 |
59.279 |
8.404 |
T P |
1qgy_A |
295 |
229 |
192 |
2.23 |
16.15 |
59.113 |
8.234 |
T P |
1quf_A |
296 |
229 |
189 |
2.20 |
19.05 |
59.011 |
8.209 |
T P |
1w35_A |
295 |
229 |
189 |
2.18 |
15.34 |
58.989 |
8.285 |
T P |
1w34_A |
295 |
229 |
191 |
2.20 |
19.90 |
58.972 |
8.303 |
T P |
1h42_A |
295 |
229 |
190 |
2.20 |
20.00 |
58.666 |
8.261 |
T P |
1ep1_B |
261 |
229 |
183 |
2.11 |
12.02 |
58.308 |
8.273 |
T P |
1ep3_B |
261 |
229 |
180 |
2.11 |
12.22 |
56.916 |
8.135 |
T P |
1a8p_A |
257 |
229 |
184 |
2.19 |
18.48 |
56.124 |
8.030 |
T P |
2qdx_A |
257 |
229 |
186 |
2.26 |
18.28 |
55.928 |
7.889 |
T P |
2pia_A |
321 |
229 |
188 |
2.25 |
15.96 |
55.760 |
7.992 |
T P |
2bgi_A |
257 |
229 |
175 |
2.25 |
16.00 |
53.537 |
7.450 |
T P |
1tvc_A |
250 |
229 |
176 |
2.15 |
23.30 |
51.924 |
7.829 |
T P |
1cqx_A |
403 |
229 |
151 |
2.39 |
17.88 |
44.760 |
6.075 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]