LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_411.5wLII_11277_158
Total number of 3D structures: 110
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1p4d_B
276
327
257
0.82
23.35
77.567
28.085
T P
2q7t_A
267
327
250
0.97
23.60
74.816
23.373
T P
2a0i_A
293
327
258
1.44
20.93
73.998
16.748
T P
1osb_A
287
327
227
1.66
29.52
66.211
12.919
T P
2cdm_A
280
327
227
1.66
29.52
65.096
12.903
T P
1omh_A
282
327
225
1.75
29.33
63.402
12.182
T P
1taq_A
807
327
76
2.25
10.53
17.104
3.236
T P
1ega_B
293
327
69
2.32
1.45
15.514
2.849
T P
2zws_A
630
327
70
2.57
5.71
14.713
2.623
T P
1bgx_T
828
327
76
2.80
10.53
14.062
2.616
T P
2c03_B
297
327
64
2.41
7.81
14.000
2.550
T P
1goj_A
354
327
69
2.70
1.45
13.736
2.460
T P
1w36_B
1158
327
62
2.54
9.68
13.534
2.347
T P
2hko_A
647
327
69
2.61
10.14
13.446
2.542
T P
1gm5_A
729
327
65
2.72
3.08
13.148
2.302
T P
2fmp_A
326
327
67
2.74
5.97
13.002
2.356
T P
1f9w_A
300
327
62
2.61
4.84
12.975
2.291
T P
2j7p_A
292
327
58
2.38
8.62
12.942
2.336
T P
3kar_A
323
327
62
2.40
0.00
12.775
2.478
T P
2v3c_C
403
327
60
2.71
5.00
12.672
2.138
T P
2ffh_A
407
327
60
2.66
8.33
12.595
2.174
T P
1g8p_A
321
327
64
2.53
12.50
12.579
2.434
T P
1hei_A
443
327
64
2.96
7.81
12.561
2.091
T P
2j45_A
297
327
60
2.32
5.00
12.478
2.482
T P
2o8b_A
831
327
60
2.58
13.33
12.375
2.239
T P
1f9u_A
310
327
56
2.40
5.36
12.366
2.236
T P
1ye8_A
172
327
58
2.50
6.90
12.167
2.232
T P
1ls1_A
289
327
60
2.37
5.00
12.131
2.431
T P
2yvu_A
179
327
57
2.30
7.02
12.084
2.376
T P
1fnn_A
379
327
60
2.58
8.33
12.034
2.242
T P
2pjr_F
544
327
58
2.57
5.17
11.982
2.171
T P
2va8_B
695
327
56
2.53
3.57
11.961
2.127
T P
1pjr_A
623
327
55
2.43
7.27
11.895
2.173
T P
2e57_A
606
327
53
2.45
5.66
11.885
2.081
T P
2i3b_A
189
327
58
2.47
6.90
11.779
2.261
T P
1a1v_A
432
327
58
2.59
8.62
11.776
2.154
T P
2o8e_A
824
327
55
2.65
7.27
11.702
2.004
T P
1ffh_A
287
327
53
2.38
3.77
11.688
2.139
T P
2ce7_C
421
327
63
2.86
4.76
11.625
2.131
T P
2h58_A
316
327
53
2.45
7.55
11.589
2.075
T P
1ry6_A
319
327
59
2.70
5.08
11.585
2.104
T P
2is6_A
654
327
57
2.72
3.51
11.492
2.018
T P
1f9v_A
313
327
52
2.44
5.77
11.435
2.043
T P
2f55_A
432
327
55
2.68
5.45
11.403
1.978
T P
2iw5_A
666
327
56
2.78
0.00
11.388
1.944
T P
1jpn_A
296
327
54
2.36
3.70
11.382
2.199
T P
1fts_A
295
327
53
2.32
9.43
11.319
2.188
T P
2z83_A
426
327
55
2.81
3.64
11.312
1.888
T P
2zjo_A
444
327
55
2.77
3.64
11.251
1.915
T P
1zu4_A
305
327
51
2.32
5.88
11.194
2.110
T P
1xzp_A
456
327
49
2.34
2.04
10.972
2.007
T P
2zzz_A
186
327
56
2.59
8.93
10.869
2.085
T P
2eww_A
343
327
47
2.29
8.51
10.762
1.967
T P
1l8q_A
321
327
51
2.76
5.88
10.692
1.786
T P
1sxj_D
328
327
52
2.82
5.77
10.674
1.783
T P
1e69_A
263
327
55
2.74
9.09
10.562
1.938
T P
2hcb_D
320
327
47
2.41
2.13
10.562
1.876
T P
2px0_A
258
327
47
2.44
10.64
10.557
1.848
T P
1ihu_A
540
327
52
2.72
1.92
10.531
1.847
T P
2csd_A
516
327
50
2.83
8.00
10.500
1.708
T P
2eyq_A
1146
327
50
2.74
4.00
10.477
1.758
T P
8ohm_A
435
327
52
2.81
7.69
10.409
1.784
T P
1i5s_A
330
327
51
2.61
5.88
10.372
1.879
T P
1qvr_A
803
327
50
2.86
12.00
10.260
1.689
T P
1rj9_B
282
327
45
2.34
8.89
10.186
1.846
T P
1sxj_C
322
327
42
2.27
11.90
10.120
1.776
T P
3dkp_A
240
327
47
2.60
2.13
10.081
1.739
T P
3dzd_A
368
327
44
2.35
13.64
10.079
1.794
T P
1w36_D
538
327
49
2.72
10.20
10.043
1.738
T P
3dm5_A
416
327
44
2.49
18.18
10.018
1.696
T P
2sqc_A
623
327
50
2.73
4.00
10.001
1.769
T P
2qby_A
366
327
48
2.91
8.33
9.920
1.597
T P
3dm9_B
305
327
47
2.45
6.38
9.918
1.842
T P
3a00_A
153
327
49
2.89
8.16
9.868
1.637
T P
2vou_A
393
327
50
2.67
2.00
9.859
1.808
T P
3e70_C
307
327
45
2.41
6.67
9.721
1.793
T P
1c4o_A
504
327
48
2.70
2.08
9.593
1.717
T P
1s2m_A
377
327
49
2.89
10.20
9.552
1.639
T P
2awn_B
374
327
46
2.66
2.17
9.524
1.667
T P
1vma_A
294
327
43
2.41
16.28
9.475
1.712
T P
1g29_1
372
327
44
2.77
6.82
9.460
1.531
T P
3e1s_A
517
327
44
2.65
9.09
9.438
1.601
T P
2pl3_A
232
327
45
2.53
6.67
9.256
1.711
T P
1njg_A
240
327
42
2.59
2.38
9.221
1.563
T P
1cu1_A
645
327
43
2.63
4.65
9.204
1.574
T P
2gsz_A
343
327
44
2.56
2.27
9.095
1.656
T P
2bgw_A
219
327
42
2.62
4.76
9.009
1.545
T P
2dw4_A
634
327
44
2.85
6.82
8.981
1.490
T P
2bmf_B
443
327
47
2.89
8.51
8.873
1.571
T P
1bg2_A
323
327
46
2.90
6.52
8.868
1.534
T P
1np6_B
169
327
41
2.59
2.44
8.751
1.523
T P
2ng1_A
293
327
38
2.24
5.26
8.699
1.627
T P
1uaa_A
636
327
42
2.77
4.76
8.691
1.461
T P
3kin_B
117
327
45
2.67
2.22
8.643
1.624
T P
2pt7_A
323
327
42
2.64
9.52
8.516
1.535
T P
3bh1_D
487
327
40
3.03
5.00
8.437
1.280
T P
1d2m_A
552
327
42
2.94
11.90
8.421
1.381
T P
2kin_B
100
327
40
2.58
10.00
8.269
1.495
T P
2zzy_A
186
327
39
2.57
10.26
8.259
1.458
T P
2gry_A
327
327
37
2.67
5.41
8.229
1.336
T P
2ewv_A
343
327
39
2.58
12.82
8.211
1.456
T P
1vdd_A
199
327
35
2.61
2.86
8.073
1.292
T P
2bhn_A
211
327
40
2.64
0.00
7.967
1.460
T P
1qhh_A
164
327
38
2.57
5.26
7.780
1.421
T P
2imj_A
158
327
36
3.05
11.11
7.663
1.144
T P
2v1c_A
198
327
36
2.64
2.78
7.434
1.316
T P
2eyu_A
247
327
33
2.55
9.09
7.309
1.245
T P
2qy9_A
300
327
37
2.91
13.51
7.168
1.231
T P
2gk6_A
602
327
35
2.87
8.57
6.846
1.178
T P
2iyk_A
155
327
27
2.80
3.70
5.709
0.932
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]