LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_419.5wLII_11277_198
Total number of 3D structures: 55
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2uy8_A
377
132
115
1.02
15.65
85.769
10.222
T P
1l3j_A
372
132
113
0.92
16.81
85.443
11.027
T P
2uya_A
375
132
114
1.02
17.54
85.304
10.170
T P
2uy9_A
377
132
114
0.92
17.54
85.211
11.198
T P
2uyb_A
377
132
114
0.91
17.54
85.204
11.278
T P
2v09_A
377
132
114
0.93
16.67
85.045
11.040
T P
1y3t_A
330
132
91
1.69
7.69
64.692
5.097
T P
2h0v_A
335
132
94
1.79
7.45
64.601
4.965
T P
1y9q_A
178
132
81
1.66
7.41
57.134
4.604
T P
2qnk_A
286
132
83
1.92
6.02
54.608
4.109
T P
2bnm_A
194
132
78
1.81
14.10
50.768
4.074
T P
2o0b_A
424
132
49
2.50
6.12
25.023
1.885
T P
2cvh_A
220
132
45
2.25
8.89
24.912
1.914
T P
2bjb_A
421
132
52
2.57
1.92
24.893
1.950
T P
2hnf_A
130
132
41
2.40
9.76
24.545
1.641
T P
2ho0_A
128
132
42
2.28
7.14
23.770
1.761
T P
2aw6_A
287
132
47
2.50
0.00
22.829
1.806
T P
3bdn_A
234
132
40
2.30
10.00
22.562
1.667
T P
2axv_B
303
132
44
2.54
4.55
21.229
1.667
T P
2awi_A
298
132
41
2.87
9.76
20.475
1.379
T P
2axu_A
303
132
41
2.84
4.88
20.221
1.395
T P
1f39_A
101
132
37
2.50
0.00
19.280
1.421
T P
2qfc_A
284
132
41
2.74
12.20
19.217
1.444
T P
2e0z_A
236
132
36
2.65
11.11
18.441
1.310
T P
1kca_A
101
132
35
2.62
0.00
18.291
1.285
T P
1lli_B
92
132
36
2.72
8.33
17.994
1.276
T P
2ef8_A
84
132
35
2.73
8.57
17.286
1.236
T P
2grm_A
315
132
34
2.77
5.88
16.891
1.186
T P
3f6w_A
82
132
35
2.84
5.71
16.752
1.192
T P
3clc_B
77
132
33
2.82
9.09
16.210
1.130
T P
2jvl_A
107
132
32
2.93
9.38
15.986
1.055
T P
3b7h_A
76
132
30
2.45
13.33
15.875
1.179
T P
1y7y_A
69
132
30
2.48
3.33
15.553
1.164
T P
3f52_E
78
132
30
2.74
3.33
15.414
1.056
T P
2p5t_E
95
132
32
2.64
0.00
15.284
1.170
T P
1x57_A
91
132
32
2.69
0.00
15.159
1.148
T P
1sq8_A
64
132
25
2.41
8.00
15.111
0.994
T P
1b0n_A
103
132
32
2.87
12.50
15.108
1.078
T P
1rio_A
97
132
27
2.49
0.00
15.089
1.043
T P
3cec_A
91
132
27
2.83
11.11
14.730
0.922
T P
1r63_A
63
132
27
2.55
7.41
14.631
1.020
T P
2ewt_A
71
132
30
2.68
10.00
14.585
1.078
T P
2r63_A
63
132
29
3.01
3.45
14.545
0.933
T P
1r69_A
63
132
28
2.92
10.71
13.869
0.927
T P
3eus_A
85
132
28
2.85
0.00
13.537
0.950
T P
1utx_A
66
132
23
2.69
13.04
13.452
0.826
T P
2b5a_A
77
132
23
2.71
8.70
13.387
0.819
T P
1adr_A
76
132
25
2.76
0.00
13.231
0.873
T P
2cro_A
65
132
27
2.63
11.11
13.085
0.988
T P
3dnv_B
71
132
26
2.77
3.85
12.635
0.905
T P
3bs3_A
62
132
23
2.55
8.70
12.544
0.868
T P
2axz_A
306
132
23
2.63
8.70
12.332
0.843
T P
1lmb_4
92
132
18
2.87
16.67
10.160
0.606
T P
2k9q_A
77
132
19
2.72
5.26
10.087
0.674
T P
2r1j_L
66
132
17
2.96
5.88
9.154
0.556
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]