LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_421.5wLII_11277_202
Total number of 3D structures: 66
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1k6m_A
432
162
142
1.09
22.54
85.115
11.902
T P
2bif_A
432
162
142
1.10
20.42
84.844
11.795
T P
1bif_A
432
162
142
1.09
20.42
84.803
11.925
T P
3bif_A
432
162
142
1.18
20.42
84.527
11.078
T P
2axn_A
451
162
124
1.33
21.77
72.620
8.647
T P
1fbt_A
190
162
114
1.20
23.68
67.357
8.800
T P
1tip_A
190
162
114
1.23
23.68
67.178
8.570
T P
1c80_A
191
162
114
1.28
23.68
66.485
8.243
T P
3ezn_A
236
162
106
1.93
9.43
56.768
5.217
T P
2h4x_A
255
162
105
1.93
6.67
55.673
5.172
T P
2hhj_A
254
162
105
1.92
6.67
55.551
5.202
T P
1fzt_A
211
162
101
1.91
7.92
53.795
5.014
T P
1qhf_A
240
162
105
1.94
8.57
52.484
5.153
T P
3fdz_B
228
162
104
1.95
9.62
51.898
5.074
T P
1rii_A
243
162
105
2.02
11.43
51.852
4.946
T P
3d8h_B
235
162
102
1.92
6.86
51.823
5.057
T P
1yfk_A
243
162
107
2.05
11.21
51.817
4.969
T P
5pgm_D
235
162
103
1.91
8.74
51.705
5.118
T P
1e58_A
246
162
105
2.00
9.52
51.522
5.002
T P
1xq9_A
241
162
104
2.03
11.54
51.305
4.874
T P
1e59_A
239
162
99
1.89
10.10
49.438
4.979
T P
1ebb_A
202
162
103
2.16
9.71
47.072
4.560
T P
1h2e_A
207
162
104
2.11
10.58
46.841
4.706
T P
2a6p_A
193
162
100
2.17
11.00
45.693
4.397
T P
3pgm_A
230
162
102
2.21
7.84
45.433
4.409
T P
2p2z_A
171
162
94
2.18
14.89
41.584
4.124
T P
2p77_A
171
162
92
2.19
15.22
41.068
4.023
T P
1v37_A
171
162
93
2.15
15.05
41.020
4.125
T P
2p30_A
177
162
89
2.10
15.73
41.005
4.054
T P
2p9y_A
171
162
90
2.09
16.67
40.910
4.118
T P
2ekb_A
171
162
92
2.17
15.22
40.672
4.057
T P
2p79_A
171
162
90
2.11
16.67
40.550
4.075
T P
2pa0_A
171
162
90
2.23
15.56
40.025
3.867
T P
2ekz_A
171
162
89
2.12
14.61
39.977
4.001
T P
2owd_A
171
162
89
2.12
16.85
39.828
4.002
T P
2p6m_A
171
162
88
2.13
15.91
39.493
3.950
T P
2p2y_A
170
162
90
2.16
17.78
39.254
3.988
T P
2p6o_A
171
162
89
2.23
15.73
38.553
3.812
T P
2p75_A
171
162
88
2.16
14.77
38.302
3.897
T P
2owe_A
170
162
90
2.23
15.56
38.275
3.864
T P
3e4p_A
254
162
49
2.63
10.20
20.484
1.798
T P
2zbb_A
255
162
46
2.47
8.70
20.224
1.793
T P
3by9_A
259
162
49
2.64
6.12
20.210
1.788
T P
3e4o_A
254
162
50
2.77
6.00
19.636
1.742
T P
3b8t_A
358
162
48
2.95
4.17
19.558
1.576
T P
1xfc_A
366
162
50
2.83
6.00
19.313
1.706
T P
2vd9_A
386
162
47
2.80
4.26
19.310
1.620
T P
3c2w_C
482
162
43
2.59
16.28
18.996
1.598
T P
2j66_A
390
162
43
2.77
9.30
18.915
1.496
T P
2odo_A
354
162
46
2.76
2.17
18.697
1.607
T P
3b8u_A
358
162
45
2.86
2.22
18.471
1.522
T P
1w8g_A
226
162
46
2.61
15.22
18.295
1.698
T P
1vfs_A
382
162
44
2.83
9.09
18.029
1.503
T P
1xql_A
381
162
41
2.64
4.88
17.930
1.495
T P
2vd8_A
386
162
48
3.09
6.25
17.796
1.504
T P
2rjg_A
358
162
44
2.71
4.55
17.664
1.565
T P
2sfp_A
378
162
43
2.76
6.98
17.614
1.503
T P
2a3v_B
320
162
43
2.79
4.65
17.545
1.485
T P
1epv_A
381
162
44
2.73
6.82
17.533
1.556
T P
1bd0_A
381
162
43
2.94
4.65
17.137
1.414
T P
1a0p_A
271
162
37
2.42
0.00
16.700
1.466
T P
1rcq_A
356
162
40
2.74
7.50
16.019
1.407
T P
3b8w_A
358
162
45
3.06
8.89
15.971
1.425
T P
3b8v_A
358
162
38
2.89
2.63
15.604
1.271
T P
3co8_A
360
162
35
2.77
8.57
14.007
1.219
T P
2dy3_D
344
162
29
2.84
3.45
11.755
0.986
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]