LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_422.5wLII_11277_203
Total number of 3D structures: 19
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1jad_A |
242 |
98 |
51 |
1.96 |
7.84 |
45.467 |
2.477 |
T P |
1f5n_A |
570 |
98 |
59 |
2.37 |
6.78 |
43.120 |
2.388 |
T P |
2iw5_A |
666 |
98 |
48 |
2.14 |
2.08 |
42.146 |
2.145 |
T P |
2z3y_A |
643 |
98 |
54 |
2.46 |
5.56 |
41.996 |
2.111 |
T P |
2h94_A |
647 |
98 |
55 |
2.51 |
3.64 |
41.518 |
2.105 |
T P |
2dw4_A |
634 |
98 |
54 |
2.47 |
5.56 |
41.496 |
2.104 |
T P |
2v1d_A |
666 |
98 |
49 |
2.10 |
8.16 |
40.656 |
2.225 |
T P |
2hko_A |
647 |
98 |
54 |
2.38 |
5.56 |
40.128 |
2.179 |
T P |
3f9m_A |
451 |
98 |
40 |
1.85 |
7.50 |
37.638 |
2.047 |
T P |
1wle_B |
469 |
98 |
45 |
2.26 |
2.22 |
36.687 |
1.909 |
T P |
2dq0_A |
447 |
98 |
43 |
2.25 |
6.98 |
33.968 |
1.832 |
T P |
3epv_A |
109 |
98 |
35 |
1.56 |
5.71 |
33.793 |
2.114 |
T P |
1qvr_A |
803 |
98 |
40 |
2.07 |
5.00 |
32.763 |
1.842 |
T P |
1h6k_C |
733 |
98 |
41 |
2.22 |
4.88 |
31.571 |
1.764 |
T P |
1q0g_A |
117 |
98 |
39 |
2.35 |
12.82 |
30.640 |
1.589 |
T P |
2jeo_A |
212 |
98 |
33 |
2.24 |
6.06 |
26.759 |
1.412 |
T P |
1miu_A |
671 |
98 |
36 |
2.83 |
5.56 |
25.359 |
1.230 |
T P |
1wdk_C |
390 |
98 |
28 |
1.96 |
0.00 |
24.385 |
1.357 |
T P |
1ual_A |
243 |
98 |
31 |
2.52 |
6.45 |
22.615 |
1.182 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]