LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_424.5wLII_11277_206
Total number of 3D structures: 43
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
144 |
138 |
0.54 |
20.29 |
95.809 |
21.612 |
T P |
2fi7_A |
223 |
144 |
137 |
1.62 |
12.41 |
88.319 |
7.958 |
T P |
2ho1_A |
222 |
144 |
137 |
1.65 |
12.41 |
87.805 |
7.839 |
T P |
2vq2_A |
220 |
144 |
135 |
1.69 |
17.04 |
86.388 |
7.528 |
T P |
2pl2_A |
194 |
144 |
135 |
1.80 |
14.81 |
83.748 |
7.114 |
T P |
2gw1_A |
487 |
144 |
132 |
1.91 |
13.64 |
81.331 |
6.576 |
T P |
2fo7_A |
136 |
144 |
129 |
1.88 |
17.05 |
80.036 |
6.527 |
T P |
2c0l_A |
292 |
144 |
126 |
1.75 |
16.67 |
79.127 |
6.793 |
T P |
1hh8_A |
192 |
144 |
126 |
1.90 |
8.73 |
78.303 |
6.294 |
T P |
1xnf_B |
262 |
144 |
130 |
2.00 |
17.69 |
78.261 |
6.191 |
T P |
1wm5_A |
205 |
144 |
126 |
1.94 |
7.14 |
78.191 |
6.181 |
T P |
1e96_B |
185 |
144 |
124 |
2.00 |
10.48 |
76.662 |
5.909 |
T P |
1fch_A |
302 |
144 |
124 |
1.89 |
16.13 |
76.640 |
6.217 |
T P |
2bug_A |
131 |
144 |
119 |
1.60 |
16.81 |
76.492 |
6.986 |
T P |
2vgy_A |
132 |
144 |
120 |
1.76 |
11.67 |
76.075 |
6.450 |
T P |
2c2l_A |
281 |
144 |
118 |
1.72 |
12.71 |
76.007 |
6.480 |
T P |
1a17_A |
159 |
144 |
114 |
1.56 |
18.42 |
75.472 |
6.858 |
T P |
2vyi_A |
128 |
144 |
116 |
1.57 |
13.79 |
75.411 |
6.931 |
T P |
1elr_A |
128 |
144 |
115 |
1.58 |
16.52 |
74.906 |
6.856 |
T P |
2vsy_A |
547 |
144 |
128 |
2.00 |
12.50 |
74.720 |
6.082 |
T P |
1elw_A |
117 |
144 |
116 |
1.66 |
13.79 |
73.977 |
6.605 |
T P |
2e2e_A |
171 |
144 |
112 |
1.58 |
11.61 |
73.505 |
6.673 |
T P |
2dba_A |
148 |
144 |
116 |
1.71 |
12.93 |
73.422 |
6.398 |
T P |
1qz2_A |
285 |
144 |
117 |
1.89 |
11.11 |
72.858 |
5.893 |
T P |
1p5q_A |
283 |
144 |
116 |
1.87 |
11.21 |
72.819 |
5.877 |
T P |
1wao_1 |
471 |
144 |
114 |
1.89 |
17.54 |
72.690 |
5.739 |
T P |
3cv0_A |
300 |
144 |
121 |
2.06 |
14.05 |
72.040 |
5.606 |
T P |
1ihg_A |
364 |
144 |
114 |
1.94 |
12.28 |
70.992 |
5.592 |
T P |
1kt1_A |
374 |
144 |
115 |
1.95 |
11.30 |
70.782 |
5.612 |
T P |
1na0_A |
119 |
144 |
113 |
1.94 |
16.81 |
69.825 |
5.532 |
T P |
2j9q_A |
300 |
144 |
110 |
1.83 |
13.64 |
69.149 |
5.696 |
T P |
3cvq_A |
289 |
144 |
109 |
1.91 |
12.84 |
67.089 |
5.429 |
T P |
2c0m_C |
302 |
144 |
106 |
1.86 |
16.04 |
66.902 |
5.400 |
T P |
1kt0_A |
357 |
144 |
107 |
1.88 |
11.21 |
66.901 |
5.410 |
T P |
2fbn_A |
153 |
144 |
112 |
2.13 |
13.39 |
66.444 |
5.029 |
T P |
2q7f_A |
194 |
144 |
112 |
2.15 |
13.39 |
65.277 |
4.983 |
T P |
3ceq_B |
269 |
144 |
114 |
2.31 |
17.54 |
65.255 |
4.721 |
T P |
3edt_B |
258 |
144 |
117 |
2.25 |
16.24 |
64.347 |
4.981 |
T P |
2vsn_A |
534 |
144 |
116 |
2.07 |
13.79 |
63.304 |
5.336 |
T P |
2if4_A |
258 |
144 |
102 |
2.01 |
15.69 |
61.834 |
4.841 |
T P |
1ouv_A |
265 |
144 |
107 |
2.12 |
11.21 |
60.269 |
4.819 |
T P |
1na3_A |
86 |
144 |
83 |
1.37 |
19.28 |
55.205 |
5.647 |
T P |
2avp_A |
68 |
144 |
68 |
0.70 |
23.53 |
46.896 |
8.526 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]