LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_427.5wLII_11277_221
Total number of 3D structures: 20
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1hnh_A |
316 |
57 |
50 |
1.49 |
18.00 |
83.387 |
3.154 |
T P |
1ebl_A |
317 |
57 |
50 |
1.43 |
18.00 |
83.364 |
3.275 |
T P |
1hnj_A |
317 |
57 |
50 |
1.53 |
18.00 |
83.256 |
3.064 |
T P |
1mzs_A |
317 |
57 |
50 |
1.49 |
18.00 |
83.256 |
3.144 |
T P |
1ub7_A |
321 |
57 |
50 |
1.48 |
18.00 |
82.395 |
3.161 |
T P |
1mzj_A |
334 |
57 |
49 |
1.55 |
12.24 |
81.741 |
2.965 |
T P |
1zow_A |
312 |
57 |
50 |
1.62 |
10.00 |
81.679 |
2.902 |
T P |
2ebd_A |
309 |
57 |
48 |
1.49 |
22.92 |
80.809 |
3.023 |
T P |
1hzp_A |
334 |
57 |
50 |
1.81 |
22.00 |
80.309 |
2.619 |
T P |
1u6e_A |
334 |
57 |
50 |
1.79 |
22.00 |
80.309 |
2.645 |
T P |
2aj9_A |
334 |
57 |
50 |
1.81 |
20.00 |
80.294 |
2.623 |
T P |
2ahb_A |
334 |
57 |
50 |
1.92 |
20.00 |
79.548 |
2.469 |
T P |
1m1m_A |
332 |
57 |
50 |
1.98 |
22.00 |
78.632 |
2.399 |
T P |
2qo0_B |
331 |
57 |
46 |
2.05 |
15.22 |
71.231 |
2.143 |
T P |
3bre_B |
328 |
57 |
26 |
2.03 |
7.69 |
37.164 |
1.219 |
T P |
2b5u_A |
470 |
57 |
27 |
2.33 |
3.70 |
34.330 |
1.113 |
T P |
1w25_A |
454 |
57 |
27 |
2.97 |
7.41 |
31.590 |
0.880 |
T P |
1jch_A |
468 |
57 |
25 |
2.72 |
16.00 |
30.476 |
0.886 |
T P |
3ezu_A |
336 |
57 |
21 |
2.37 |
0.00 |
28.337 |
0.849 |
T P |
2pr5_A |
127 |
57 |
24 |
2.63 |
4.17 |
28.256 |
0.879 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]