LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_431.5wLII_11277_241
Total number of 3D structures: 33
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ei3_C
397
118
95
2.23
13.68
64.330
4.085
T P
1m1j_C
390
118
83
2.41
18.07
51.898
3.310
T P
1g8x_A
1009
118
83
2.31
4.82
48.920
3.439
T P
1y1u_A
544
118
61
2.26
1.64
38.452
2.580
T P
2dw4_A
634
118
62
2.27
12.90
38.408
2.619
T P
2iw5_A
666
118
59
2.23
13.56
38.404
2.532
T P
2hn2_A
331
118
59
2.33
5.08
36.784
2.427
T P
2iub_F
342
118
56
2.32
3.57
36.292
2.311
T P
1jch_A
468
118
53
2.49
7.55
36.195
2.050
T P
2z3y_A
643
118
56
2.30
12.50
36.092
2.333
T P
2v1d_A
666
118
48
2.04
18.75
35.277
2.244
T P
1f5n_A
570
118
57
2.50
8.77
32.891
2.196
T P
2hko_A
647
118
55
2.43
7.27
32.148
2.170
T P
2b5u_A
470
118
52
2.59
7.69
31.560
1.934
T P
1zvu_A
685
118
50
2.39
6.00
31.508
2.012
T P
1bg1_A
559
118
55
2.48
12.73
31.312
2.129
T P
1qvr_A
803
118
45
2.21
4.44
30.608
1.951
T P
2h94_A
647
118
51
2.38
7.84
30.433
2.060
T P
1h6k_C
733
118
42
2.05
2.38
30.363
1.954
T P
1ij5_A
305
118
42
2.07
2.38
30.332
1.935
T P
2r0q_C
193
118
46
2.38
6.52
29.503
1.858
T P
2dq3_A
425
118
49
2.57
12.24
29.337
1.832
T P
2dq0_A
447
118
45
2.21
8.89
29.221
1.946
T P
1wle_B
469
118
47
2.58
4.26
27.592
1.757
T P
1smq_A
329
118
35
2.14
5.71
25.085
1.566
T P
2j5u_A
210
118
32
1.64
9.38
25.071
1.835
T P
1lrz_A
400
118
38
2.36
5.26
24.632
1.548
T P
1ses_A
421
118
40
2.55
12.50
24.319
1.507
T P
1jk0_A
334
118
35
2.05
8.57
24.318
1.630
T P
2k27_A
159
118
41
2.64
7.32
22.995
1.498
T P
2fge_A
979
118
35
2.51
0.00
21.792
1.340
T P
3bu8_B
207
118
38
2.68
10.53
20.941
1.368
T P
1k78_A
124
118
27
2.61
7.41
15.894
0.997
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]