LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_44.5wLII_10933_16
Total number of 3D structures: 55
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1t5e_A
231
267
178
1.28
22.47
64.456
12.909
T P
1vf7_E
252
267
178
1.52
22.47
64.047
10.972
T P
2f1m_C
247
267
167
1.87
22.16
52.735
8.478
T P
1iyu_A
79
267
74
1.64
20.27
25.417
4.253
T P
1y8o_B
97
267
74
1.95
18.92
24.843
3.614
T P
2dnc_A
98
267
71
1.79
19.72
24.668
3.757
T P
3crk_C
86
267
72
1.86
19.44
24.595
3.669
T P
1wp1_A
456
267
73
2.00
8.22
24.328
3.483
T P
2ejm_A
99
267
67
1.65
25.37
24.214
3.836
T P
1z6h_A
72
267
67
1.53
20.90
23.955
4.122
T P
2evb_A
74
267
66
1.38
30.30
23.857
4.452
T P
2dne_A
108
267
70
1.86
22.86
23.785
3.565
T P
1bdo_A
80
267
66
1.55
27.27
23.717
4.008
T P
1dcz_A
77
267
65
1.47
24.62
23.431
4.147
T P
1a6x_A
87
267
71
2.00
22.54
23.283
3.388
T P
3bg3_A
679
267
68
1.73
19.12
23.224
3.709
T P
1qjo_A
80
267
68
1.96
23.53
22.424
3.305
T P
1o78_A
84
267
67
2.12
23.88
21.885
3.020
T P
1pmr_A
80
267
65
2.04
20.00
20.390
3.043
T P
1ghj_A
79
267
69
1.91
18.84
20.030
3.440
T P
3bdo_A
82
267
63
2.00
26.98
19.939
2.996
T P
1lab_A
80
267
64
2.04
23.44
18.975
2.985
T P
1k8m_A
87
267
68
2.32
16.18
18.413
2.805
T P
1cii_A
602
267
69
2.42
11.59
17.795
2.740
T P
2gho_D
1196
267
72
2.85
6.94
17.133
2.437
T P
1hqm_D
1175
267
69
2.75
11.59
16.723
2.424
T P
2fic_B
201
267
62
2.54
14.52
16.518
2.346
T P
2be5_D
1392
267
68
2.54
4.41
16.484
2.577
T P
1fyc_A
106
267
64
2.45
17.19
15.995
2.506
T P
2qf7_A
1075
267
58
2.80
8.62
14.157
2.000
T P
2ppl_A
449
267
53
2.49
7.55
13.909
2.042
T P
3bg5_A
1137
267
56
2.80
7.14
13.296
1.929
T P
1dpd_A
243
267
52
2.59
9.62
12.915
1.934
T P
1b5s_A
242
267
52
2.61
5.77
12.741
1.920
T P
1dpb_A
243
267
48
2.49
10.42
12.713
1.852
T P
1eaa_A
243
267
46
2.18
8.70
12.447
2.016
T P
1dpc_A
243
267
45
2.21
8.89
12.433
1.945
T P
1scz_A
233
267
49
2.54
4.08
12.418
1.858
T P
2jku_A
35
267
35
1.49
20.00
12.384
2.198
T P
1ddq_D
1077
267
46
2.66
8.70
11.901
1.667
T P
1c1g_A
284
267
38
2.25
0.00
11.717
1.620
T P
2ii3_A
234
267
42
2.63
0.00
11.504
1.538
T P
2b3y_A
888
267
46
2.73
4.35
11.418
1.624
T P
3b8k_A
239
267
44
2.47
4.55
11.234
1.711
T P
1i6v_D
1174
267
45
2.82
6.67
11.070
1.540
T P
1qz2_A
285
267
43
2.77
6.98
10.506
1.497
T P
3g5w_A
318
267
32
2.88
9.38
8.128
1.072
T P
1zy8_K
44
267
30
2.44
6.67
7.541
1.179
T P
1w4e_A
45
267
27
2.33
7.41
7.206
1.109
T P
2ipy_A
847
267
26
2.81
3.85
7.064
0.895
T P
3dva_I
42
267
26
2.24
15.38
7.010
1.111
T P
1ebd_C
41
267
26
2.54
3.85
6.971
0.984
T P
1w85_I
42
267
25
2.31
12.00
6.854
1.035
T P
2coo_A
70
267
26
2.69
11.54
6.694
0.931
T P
1zwv_A
52
267
25
2.82
4.00
6.507
0.855
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]