LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_440.5wLII_11277_276
Total number of 3D structures: 44
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2gw1_A |
487 |
490 |
434 |
1.30 |
16.59 |
84.509 |
31.097 |
T P |
2ho1_A |
222 |
490 |
153 |
2.01 |
12.42 |
26.153 |
7.266 |
T P |
2pl2_A |
194 |
490 |
163 |
2.17 |
12.27 |
26.146 |
7.185 |
T P |
1hz4_A |
366 |
490 |
175 |
2.25 |
8.57 |
25.615 |
7.450 |
T P |
2fi7_A |
223 |
490 |
150 |
1.95 |
12.00 |
25.375 |
7.304 |
T P |
1qz2_A |
285 |
490 |
126 |
1.72 |
11.90 |
24.084 |
6.906 |
T P |
1ihg_A |
364 |
490 |
127 |
1.75 |
10.24 |
23.994 |
6.866 |
T P |
1p5q_A |
283 |
490 |
125 |
1.69 |
12.00 |
23.956 |
6.977 |
T P |
2c0l_A |
292 |
490 |
150 |
2.23 |
14.00 |
23.828 |
6.435 |
T P |
1w3b_A |
388 |
490 |
167 |
2.36 |
10.78 |
23.466 |
6.796 |
T P |
1kt1_A |
374 |
490 |
123 |
1.72 |
12.20 |
23.376 |
6.746 |
T P |
1xnf_B |
262 |
490 |
162 |
2.36 |
10.49 |
23.283 |
6.598 |
T P |
2j9q_A |
300 |
490 |
148 |
2.27 |
12.16 |
23.269 |
6.253 |
T P |
1a17_A |
159 |
490 |
127 |
2.03 |
12.60 |
22.947 |
5.961 |
T P |
1fch_A |
302 |
490 |
150 |
2.29 |
13.33 |
22.822 |
6.282 |
T P |
1kt0_A |
357 |
490 |
121 |
1.92 |
10.74 |
22.647 |
5.988 |
T P |
3ceq_B |
269 |
490 |
126 |
2.00 |
14.29 |
22.288 |
6.002 |
T P |
1e96_B |
185 |
490 |
126 |
2.02 |
10.32 |
22.252 |
5.948 |
T P |
1wm5_A |
205 |
490 |
130 |
2.08 |
11.54 |
22.250 |
5.967 |
T P |
2vq2_A |
220 |
490 |
149 |
2.24 |
8.72 |
22.139 |
6.357 |
T P |
1wao_1 |
471 |
490 |
135 |
2.07 |
11.85 |
21.953 |
6.216 |
T P |
2c0m_C |
302 |
490 |
143 |
2.36 |
13.99 |
21.873 |
5.821 |
T P |
1elr_A |
128 |
490 |
121 |
1.90 |
10.74 |
21.767 |
6.051 |
T P |
3cv0_A |
300 |
490 |
141 |
2.25 |
15.60 |
21.731 |
6.012 |
T P |
2fo7_A |
136 |
490 |
118 |
1.85 |
18.64 |
21.660 |
6.048 |
T P |
1na0_A |
119 |
490 |
109 |
1.34 |
16.51 |
21.326 |
7.589 |
T P |
2fbn_A |
153 |
490 |
117 |
1.91 |
13.68 |
21.200 |
5.831 |
T P |
1elw_A |
117 |
490 |
113 |
1.78 |
13.27 |
20.934 |
6.004 |
T P |
2c2l_A |
281 |
490 |
122 |
2.27 |
13.93 |
20.831 |
5.152 |
T P |
2vyi_A |
128 |
490 |
113 |
1.90 |
15.04 |
20.641 |
5.656 |
T P |
2dba_A |
148 |
490 |
109 |
1.76 |
16.51 |
20.214 |
5.874 |
T P |
1hh8_A |
192 |
490 |
126 |
2.20 |
13.49 |
20.170 |
5.482 |
T P |
2bug_A |
131 |
490 |
111 |
1.95 |
10.81 |
19.846 |
5.414 |
T P |
2vsy_A |
547 |
490 |
133 |
2.29 |
8.27 |
18.988 |
5.555 |
T P |
3edt_B |
258 |
490 |
121 |
2.31 |
10.74 |
18.374 |
5.019 |
T P |
2q7f_A |
194 |
490 |
112 |
2.23 |
10.71 |
17.758 |
4.804 |
T P |
3cvq_A |
289 |
490 |
137 |
2.59 |
9.49 |
17.661 |
5.089 |
T P |
2vsn_A |
534 |
490 |
120 |
2.27 |
8.33 |
17.545 |
5.062 |
T P |
1na3_A |
86 |
490 |
86 |
0.94 |
18.60 |
17.135 |
8.284 |
T P |
2if4_A |
258 |
490 |
111 |
2.13 |
9.91 |
16.788 |
4.979 |
T P |
1ouv_A |
265 |
490 |
108 |
2.63 |
7.41 |
15.096 |
3.956 |
T P |
3dra_A |
302 |
490 |
104 |
2.56 |
8.65 |
14.629 |
3.908 |
T P |
2avp_A |
68 |
490 |
68 |
1.34 |
19.12 |
13.214 |
4.728 |
T P |
1xi4_A |
1630 |
490 |
72 |
2.66 |
11.11 |
9.798 |
2.608 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]