LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_445.5wLII_11277_291
Total number of 3D structures: 63
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1sbp_A
309
254
250
1.31
20.00
93.609
17.781
T P
2h5y_B
233
254
204
2.02
14.22
62.888
9.612
T P
2qry_C
318
254
217
2.09
12.90
59.788
9.891
T P
1amf_A
231
254
199
2.01
15.08
59.695
9.435
T P
3c9h_B
339
254
209
2.07
10.05
57.817
9.629
T P
3cg3_A
315
254
209
2.23
13.88
56.550
8.976
T P
3cg1_A
293
254
198
2.13
14.14
53.376
8.891
T P
1mrp_A
309
254
208
2.31
9.62
53.153
8.648
T P
1y4t_A
317
254
212
2.42
9.43
52.252
8.401
T P
1d9y_A
309
254
211
2.32
7.58
51.984
8.736
T P
2ons_A
314
254
192
2.16
15.10
51.756
8.486
T P
1xvx_A
311
254
206
2.31
9.22
51.379
8.539
T P
1atg_A
231
254
186
2.26
13.44
51.234
7.898
T P
3cij_A
291
254
191
2.23
14.66
50.633
8.192
T P
1q35_A
317
254
197
2.27
11.68
50.118
8.302
T P
1poy_1
323
254
197
2.31
13.71
49.899
8.164
T P
1pot_A
322
254
194
2.31
12.89
49.048
8.063
T P
1a99_A
341
254
200
2.48
10.50
48.634
7.744
T P
1xvy_A
307
254
199
2.46
9.55
47.741
7.764
T P
2v84_A
319
254
194
2.44
10.82
47.635
7.644
T P
1r6z_Z
499
254
190
2.50
8.42
47.208
7.318
T P
1eu8_A
407
254
193
2.57
7.77
46.938
7.230
T P
3eht_A
452
254
183
2.43
7.65
46.860
7.238
T P
3d4g_E
472
254
186
2.44
7.53
46.689
7.315
T P
1mh3_A
421
254
192
2.48
8.33
46.535
7.431
T P
3fj7_A
231
254
185
2.38
14.59
46.429
7.465
T P
3fjm_A
231
254
183
2.35
16.39
46.348
7.484
T P
3c4m_A
469
254
194
2.48
8.25
46.296
7.527
T P
3ehs_A
457
254
191
2.43
7.33
46.254
7.560
T P
2vgq_A
461
254
187
2.42
7.49
46.169
7.429
T P
1hsj_A
487
254
194
2.49
8.25
46.109
7.496
T P
1mg1_A
450
254
195
2.51
8.72
46.078
7.469
T P
3ehu_A
441
254
187
2.37
7.49
46.024
7.586
T P
1mdp_1
363
254
185
2.41
7.57
45.865
7.369
T P
1y4c_A
480
254
193
2.51
8.29
45.696
7.396
T P
1a7l_A
380
254
191
2.51
8.90
45.532
7.307
T P
2ok2_A
402
254
185
2.46
8.65
45.305
7.234
T P
1mdq_A
371
254
189
2.51
8.47
45.179
7.238
T P
1nmu_A
368
254
190
2.54
7.89
45.007
7.204
T P
1t0k_A
365
254
181
2.41
8.29
44.689
7.221
T P
3f5f_A
656
254
186
2.52
9.68
44.469
7.106
T P
3fir_A
231
254
178
2.38
14.04
44.026
7.172
T P
1qw0_A
308
254
175
2.58
8.57
43.944
6.531
T P
3dm0_A
675
254
184
2.58
8.70
43.703
6.857
T P
2o68_A
307
254
172
2.51
10.47
43.642
6.586
T P
2hxw_B
230
254
180
2.51
14.44
43.580
6.895
T P
1qvs_A
308
254
172
2.56
9.30
43.469
6.469
T P
1elj_A
380
254
176
2.46
11.36
43.419
6.867
T P
2o6a_A
307
254
174
2.60
8.62
43.156
6.452
T P
2o69_A
308
254
173
2.59
9.25
43.114
6.438
T P
2pt1_A
317
254
182
2.55
15.93
42.962
6.860
T P
1nnf_A
308
254
174
2.59
10.34
42.871
6.471
T P
2voz_B
315
254
179
2.57
11.73
42.701
6.699
T P
1xc1_A
309
254
177
2.67
7.34
41.864
6.384
T P
1o7t_A
309
254
172
2.65
8.14
41.273
6.254
T P
1y9u_A
314
254
160
2.51
13.12
39.428
6.123
T P
2hq0_A
388
254
154
2.56
11.04
38.652
5.783
T P
2heu_A
391
254
141
2.44
8.51
36.568
5.555
T P
1n3x_A
366
254
134
2.35
8.96
35.232
5.463
T P
2hfb_A
383
254
132
2.44
9.85
34.064
5.188
T P
3csg_A
458
254
131
2.47
6.87
33.661
5.093
T P
2nvu_B
789
254
125
2.38
6.40
32.889
5.037
T P
3csb_A
464
254
123
2.73
11.38
29.849
4.347
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]