LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_451.5wLII_11284_3
Total number of 3D structures: 61
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3c96_A
381
360
346
0.64
25.43
95.542
46.761
T P
2rgj_A
376
360
347
0.79
25.07
95.379
39.043
T P
2vou_A
393
360
309
1.97
20.39
67.441
14.936
T P
2dkh_A
614
360
283
1.83
21.20
60.705
14.643
T P
1ykj_A
394
360
285
1.93
18.60
58.532
14.040
T P
1bf3_A
391
360
284
1.95
17.96
57.694
13.836
T P
1pn0_C
656
360
290
1.99
20.34
57.688
13.882
T P
1bgn_A
391
360
284
1.97
17.96
57.599
13.725
T P
1cj4_A
392
360
283
1.96
17.67
57.457
13.764
T P
1foh_C
656
360
289
2.00
20.07
57.424
13.756
T P
1bkw_A
391
360
284
1.96
18.66
56.447
13.761
T P
1bgj_A
391
360
284
1.98
19.01
56.404
13.682
T P
1cc4_A
391
360
284
1.94
18.31
56.396
13.902
T P
1pbd_A
391
360
284
1.97
18.31
56.132
13.712
T P
1pbf_A
391
360
286
1.99
17.83
56.112
13.704
T P
1pxc_A
394
360
284
1.99
18.66
56.060
13.558
T P
1pxa_A
394
360
284
1.98
17.96
55.955
13.639
T P
1cj2_A
391
360
283
1.96
18.02
55.907
13.715
T P
1k0i_A
394
360
282
2.08
18.79
55.880
12.931
T P
1doc_A
394
360
284
1.98
18.31
55.802
13.643
T P
1dob_A
394
360
284
1.99
17.96
55.796
13.560
T P
1pbe_A
391
360
283
1.99
18.02
55.502
13.564
T P
1cc6_A
391
360
283
1.98
17.67
55.446
13.635
T P
1pxb_A
394
360
285
1.99
18.25
55.056
13.632
T P
1cj3_A
392
360
285
2.01
17.89
54.803
13.504
T P
3e1t_A
437
360
292
2.13
19.18
54.568
13.113
T P
2qa2_A
489
360
262
2.16
22.90
54.217
11.610
T P
2qa1_A
488
360
267
2.14
21.35
51.794
11.919
T P
3c4a_A
365
360
260
1.89
16.92
51.504
13.054
T P
2r0c_A
509
360
269
2.14
20.45
51.002
12.023
T P
2e4g_A
528
360
264
2.19
14.02
48.766
11.507
T P
3cgv_A
382
360
265
2.27
17.74
48.224
11.160
T P
2pyx_A
526
360
260
2.22
13.85
47.804
11.211
T P
1x31_B
402
360
232
2.25
12.07
42.951
9.873
T P
2gah_B
403
360
228
2.21
11.40
42.855
9.865
T P
2gag_B
403
360
227
2.18
12.33
42.624
9.950
T P
1l9c_A
385
360
239
2.40
13.81
42.496
9.565
T P
1zov_A
381
360
232
2.30
14.22
42.417
9.670
T P
2gf3_A
385
360
235
2.39
14.47
42.235
9.424
T P
3bhk_A
385
360
231
2.33
14.29
42.201
9.522
T P
1b3m_A
385
360
230
2.32
14.35
42.014
9.504
T P
1el9_A
385
360
228
2.27
14.91
42.000
9.621
T P
2gmh_A
581
360
219
2.20
17.35
41.798
9.524
T P
2oln_A
385
360
222
2.43
15.77
39.374
8.788
T P
2iid_A
483
360
204
2.43
16.18
38.028
8.053
T P
2ivd_A
449
360
205
2.32
12.20
37.662
8.455
T P
2bxr_A
445
360
209
2.45
14.35
37.053
8.199
T P
1knr_A
529
360
186
2.10
15.05
36.907
8.443
T P
2e5v_A
472
360
183
2.11
13.66
35.889
8.274
T P
1qo8_A
564
360
182
2.07
14.84
35.505
8.390
T P
2gqf_A
401
360
179
2.07
17.32
35.035
8.235
T P
1b37_B
462
360
185
2.48
13.51
34.187
7.182
T P
2i0z_A
416
360
176
2.23
14.77
34.001
7.560
T P
1chu_A
478
360
163
2.04
17.18
33.044
7.617
T P
2vq7_C
445
360
163
2.30
10.43
31.334
6.793
T P
1w4x_A
533
360
149
2.16
14.09
30.151
6.593
T P
2ywl_A
180
360
141
1.97
23.40
29.551
6.813
T P
1q1r_A
421
360
135
1.86
21.48
28.242
6.874
T P
2a8x_A
464
360
134
2.08
14.18
26.913
6.154
T P
1ebd_A
455
360
131
1.93
11.45
26.702
6.439
T P
2eq6_A
460
360
131
2.13
18.32
26.050
5.866
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]