LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_458.5wLII_11346_8
Total number of 3D structures: 46
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2b5a_A
77
64
62
0.97
17.74
96.012
5.782
T P
1y7y_A
69
64
61
0.65
22.95
95.593
8.126
T P
3f52_E
78
64
62
0.97
22.58
95.230
5.800
T P
1y9q_A
178
64
63
1.40
15.87
94.716
4.199
T P
3clc_B
77
64
61
1.22
16.39
93.215
4.628
T P
2ewt_A
71
64
60
1.42
8.33
90.502
3.960
T P
3f6w_A
82
64
62
1.53
17.74
90.282
3.806
T P
2ofy_A
82
64
60
1.68
25.00
90.077
3.379
T P
3eus_A
85
64
60
1.23
15.00
89.021
4.502
T P
3b7h_A
76
64
60
1.72
21.67
87.932
3.293
T P
1lmb_4
92
64
61
1.68
11.48
87.788
3.425
T P
2bnm_A
194
64
60
1.61
15.00
87.664
3.503
T P
1adr_A
76
64
56
1.01
14.29
87.116
5.066
T P
1lli_B
92
64
60
1.81
8.33
86.794
3.146
T P
2ef8_A
84
64
61
1.75
13.11
86.794
3.291
T P
1rio_A
97
64
60
1.82
10.00
86.239
3.132
T P
3dnv_B
71
64
59
1.61
22.03
85.958
3.445
T P
1b0n_A
103
64
56
1.17
16.07
85.273
4.395
T P
2jvl_A
107
64
58
1.65
15.52
85.060
3.315
T P
2r1j_L
66
64
56
1.32
14.29
84.635
3.932
T P
1x57_A
91
64
57
1.57
19.30
84.368
3.414
T P
2axu_A
303
64
56
1.66
17.86
84.272
3.174
T P
2axz_A
306
64
56
1.55
17.86
84.183
3.404
T P
2qfc_A
284
64
58
1.53
12.07
84.142
3.550
T P
2grm_A
315
64
56
1.57
17.86
84.135
3.346
T P
2aw6_A
287
64
56
1.64
17.86
83.512
3.227
T P
2awi_A
298
64
56
1.59
17.86
83.100
3.317
T P
2axv_B
303
64
55
1.49
18.18
83.073
3.457
T P
3bdn_A
234
64
59
1.98
11.86
82.538
2.831
T P
1utx_A
66
64
55
1.39
14.55
82.436
3.684
T P
2cro_A
65
64
55
1.39
21.82
82.168
3.702
T P
2eby_A
102
64
56
1.72
10.71
81.730
3.080
T P
3cec_A
91
64
55
1.65
7.27
81.572
3.144
T P
3bs3_A
62
64
55
1.44
14.55
80.585
3.561
T P
1r69_A
63
64
55
1.49
20.00
80.482
3.449
T P
1r63_A
63
64
55
1.62
20.00
79.886
3.190
T P
1sq8_A
64
64
55
1.76
20.00
79.537
2.961
T P
2r63_A
63
64
53
1.66
20.75
77.545
3.009
T P
2iu7_A
156
64
59
2.32
11.86
70.685
2.442
T P
2ppx_A
62
64
49
1.79
12.24
69.627
2.592
T P
2k9q_A
77
64
37
2.13
16.22
51.231
1.662
T P
1a6d_B
502
64
37
2.41
13.51
43.721
1.472
T P
1b8p_A
327
64
37
2.22
13.51
43.560
1.592
T P
2ras_B
204
64
31
2.45
16.13
41.050
1.215
T P
3d5t_C
323
64
32
2.13
12.50
40.709
1.435
T P
1e0r_B
154
64
33
2.74
0.00
33.858
1.162
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]