LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_47.5wLII_10933_25
Total number of 3D structures: 110
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ssq_D
257
123
107
1.12
27.10
84.738
8.775
T P
1t3d_A
262
123
106
1.15
26.42
84.079
8.499
T P
1s80_A
241
123
107
1.23
27.10
83.964
8.060
T P
1ssm_A
240
123
107
1.32
27.10
83.490
7.548
T P
3f1x_A
276
123
100
1.46
18.00
79.094
6.417
T P
1mr7_A
203
123
62
2.01
4.84
43.426
2.941
T P
1mr9_A
203
123
61
1.91
4.92
43.269
3.042
T P
3fs8_A
259
123
58
2.20
15.52
41.391
2.523
T P
1g97_A
446
123
59
2.20
6.78
40.385
2.570
T P
3cj8_A
219
123
59
2.17
5.08
40.130
2.594
T P
3bfp_A
184
123
53
1.88
7.55
39.880
2.682
T P
1j2z_A
259
123
59
2.24
8.47
39.471
2.523
T P
1hm9_A
458
123
56
2.23
7.14
39.468
2.407
T P
1kgq_A
274
123
63
2.35
3.17
39.341
2.573
T P
2npo_A
193
123
52
1.94
3.85
38.886
2.543
T P
1hv9_B
450
123
55
2.19
16.36
38.863
2.400
T P
3bsw_A
191
123
53
2.01
3.77
38.729
2.512
T P
1krr_A
200
123
54
2.02
3.70
38.477
2.544
T P
2jf2_A
264
123
57
2.55
7.02
38.409
2.152
T P
3eg4_A
279
123
59
2.33
6.78
38.332
2.425
T P
1v3w_A
173
123
55
2.27
7.27
38.075
2.321
T P
2qkx_A
388
123
51
1.79
7.84
36.727
2.692
T P
2eg0_B
171
123
54
2.47
3.70
36.294
2.098
T P
1tdt_A
256
123
61
2.38
3.28
36.067
2.464
T P
2v0h_A
450
123
50
2.13
10.00
35.090
2.242
T P
3d98_A
390
123
54
2.16
9.26
35.042
2.386
T P
1fxj_A
327
123
50
2.07
2.00
34.466
2.302
T P
3ect_A
176
123
51
2.44
7.84
33.767
2.009
T P
1ocx_A
182
123
52
2.43
9.62
33.286
2.059
T P
2aq9_A
262
123
57
2.46
3.51
32.265
2.225
T P
2qia_A
262
123
52
2.46
3.85
30.831
2.035
T P
2iu8_A
346
123
49
2.39
4.08
29.820
1.969
T P
2ch1_A
387
123
51
2.35
3.92
29.382
2.079
T P
1xhd_A
172
123
49
2.54
2.04
29.032
1.854
T P
1j04_A
386
123
52
2.65
0.00
28.971
1.889
T P
1h0c_A
385
123
51
2.46
1.96
28.837
1.995
T P
2p2o_A
184
123
50
2.45
10.00
28.691
1.959
T P
2rfv_A
390
123
52
2.60
5.77
28.563
1.929
T P
1t3i_A
406
123
48
2.38
0.00
28.388
1.933
T P
1elu_A
382
123
50
2.35
10.00
28.287
2.041
T P
1kmj_A
405
123
48
2.38
4.17
27.960
1.932
T P
1i29_A
405
123
47
2.45
6.38
27.646
1.845
T P
1y4i_A
396
123
51
2.60
5.88
27.543
1.887
T P
1jf9_A
405
123
47
2.36
4.26
27.521
1.912
T P
1vjo_A
377
123
47
2.25
4.26
27.506
1.997
T P
1n2t_A
385
123
47
2.31
8.51
27.406
1.951
T P
1c0n_A
404
123
47
2.36
2.13
27.368
1.913
T P
2e7j_A
344
123
45
2.31
4.44
27.006
1.870
T P
1qz9_A
404
123
42
2.34
7.14
26.707
1.724
T P
3eev_C
208
123
47
2.41
2.13
26.683
1.873
T P
3ftt_A
188
123
46
2.62
2.17
26.167
1.693
T P
1ibj_A
380
123
46
2.56
6.52
25.451
1.730
T P
2z9v_A
392
123
44
2.37
6.82
25.360
1.778
T P
2dr1_A
381
123
46
2.66
8.70
24.655
1.668
T P
2hdy_A
403
123
39
2.26
10.26
24.062
1.650
T P
1b9i_A
384
123
39
2.38
7.69
23.877
1.573
T P
2huf_A
384
123
40
2.37
7.50
23.674
1.620
T P
1fje_B
175
123
35
2.31
2.86
23.211
1.453
T P
2cqc_A
95
123
37
2.14
0.00
23.171
1.652
T P
1x4b_A
116
123
42
2.84
0.00
22.934
1.429
T P
2dnz_A
95
123
37
2.27
5.41
22.931
1.562
T P
1fxl_A
167
123
40
2.48
5.00
22.825
1.549
T P
1p3w_B
385
123
39
2.36
7.69
22.719
1.586
T P
1ecx_B
365
123
38
2.41
2.63
22.689
1.515
T P
2jis_B
487
123
38
2.50
7.89
22.618
1.463
T P
1eg5_B
365
123
39
2.49
2.56
22.579
1.503
T P
3bn1_A
367
123
37
2.41
13.51
22.491
1.475
T P
1whw_A
99
123
34
2.05
5.88
22.437
1.581
T P
2cjk_A
167
123
41
2.60
2.44
22.427
1.517
T P
2yrr_A
352
123
41
2.56
7.32
22.044
1.541
T P
1lw4_D
343
123
39
2.64
0.00
22.043
1.425
T P
1x5t_A
96
123
38
2.45
0.00
21.982
1.492
T P
3dr7_A
367
123
36
2.29
2.78
21.842
1.504
T P
3f9t_A
394
123
40
2.76
2.50
21.782
1.401
T P
1hd0_A
75
123
38
2.65
5.26
21.422
1.382
T P
1b7f_A
167
123
37
2.50
2.70
21.276
1.423
T P
2dis_A
109
123
40
2.76
10.00
21.165
1.399
T P
2fy1_A
108
123
36
2.51
2.78
21.093
1.377
T P
2d9p_A
103
123
34
2.51
2.94
20.978
1.304
T P
1cvj_A
169
123
42
2.85
7.14
20.962
1.424
T P
2dgo_A
115
123
34
2.31
2.94
20.873
1.412
T P
3cai_A
396
123
38
2.65
7.89
20.831
1.380
T P
1d9a_A
85
123
36
2.64
0.00
20.828
1.313
T P
1uaw_A
77
123
38
2.61
0.00
20.805
1.402
T P
1wtb_A
79
123
34
2.47
0.00
20.705
1.322
T P
1po6_A
183
123
38
2.82
5.26
20.571
1.299
T P
1pgz_A
183
123
39
2.62
0.00
20.553
1.432
T P
2err_A
88
123
40
2.73
12.50
20.480
1.411
T P
1p1t_A
104
123
36
2.49
13.89
20.459
1.390
T P
3sxl_A
157
123
37
2.60
5.41
20.321
1.372
T P
1m32_B
362
123
34
2.45
2.94
20.157
1.332
T P
1fnx_H
174
123
38
2.84
10.53
19.894
1.292
T P
2cq3_A
103
123
34
2.61
2.94
19.798
1.254
T P
2dh7_A
105
123
37
2.69
2.70
19.324
1.324
T P
1up1_A
170
123
39
2.92
10.26
19.212
1.292
T P
2jrs_A
108
123
32
2.38
0.00
19.107
1.291
T P
2cpd_A
99
123
32
2.52
6.25
19.072
1.223
T P
2dgu_A
103
123
31
2.37
3.23
18.908
1.254
T P
1l3k_A
163
123
35
2.68
5.71
18.683
1.258
T P
3dr4_C
368
123
31
2.52
6.45
18.616
1.184
T P
2dnm_A
103
123
33
2.70
0.00
18.591
1.180
T P
1iqt_A
75
123
34
2.79
0.00
18.532
1.176
T P
2mss_A
75
123
34
2.67
8.82
18.468
1.225
T P
1x5s_A
102
123
32
2.67
0.00
18.141
1.156
T P
2qfj_B
194
123
33
2.65
6.06
18.114
1.201
T P
2dh8_A
105
123
34
2.88
17.65
17.697
1.141
T P
2dk2_A
97
123
30
2.75
3.33
16.363
1.052
T P
1b9h_A
384
123
30
2.97
6.67
16.252
0.977
T P
1ha1_A
167
123
30
2.71
3.33
16.038
1.068
T P
2dgs_A
99
123
24
2.46
0.00
14.351
0.939
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]