LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_475.5wLII_11346_58
Total number of 3D structures: 52
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3fcs_A
913
329
250
0.96
16.80
75.540
23.689
T P
3fcu_A
457
329
250
0.93
16.80
75.383
24.163
T P
1txv_A
452
329
250
0.92
16.40
75.244
24.395
T P
2vdr_A
452
329
249
0.87
16.87
75.208
25.715
T P
1jv2_A
927
329
252
1.32
13.10
73.192
17.751
T P
2w8b_B
409
329
157
2.35
6.37
31.361
6.414
T P
2qr5_A
576
329
157
2.30
9.55
30.972
6.538
T P
2w8b_A
409
329
151
2.25
6.62
30.952
6.424
T P
2hqs_A
412
329
159
2.32
5.66
30.849
6.581
T P
1crz_A
403
329
154
2.36
5.84
30.474
6.272
T P
1c5k_A
397
329
159
2.34
5.66
30.454
6.516
T P
2hu5_B
575
329
155
2.31
9.68
30.400
6.428
T P
2qzp_B
561
329
155
2.32
5.81
30.270
6.392
T P
2hu8_A
575
329
149
2.35
9.40
29.634
6.089
T P
2zux_A
582
329
141
2.26
9.93
29.551
5.967
T P
2zuy_A
604
329
143
2.25
11.19
29.467
6.076
T P
2bwr_A
401
329
140
2.58
5.71
26.405
5.228
T P
1yo8_A
621
329
73
2.42
4.11
15.780
2.893
T P
2rhp_A
622
329
74
2.54
6.76
14.366
2.804
T P
1m1j_B
402
329
60
2.28
8.33
12.682
2.526
T P
1lfa_A
183
329
47
2.65
4.26
9.630
1.706
T P
1pt6_B
195
329
50
2.74
8.00
9.441
1.759
T P
1na5_A
195
329
47
2.71
4.26
9.282
1.671
T P
1qc5_B
190
329
45
2.67
2.22
9.122
1.622
T P
1mf7_A
194
329
46
2.62
13.04
9.075
1.691
T P
2ica_A
179
329
46
2.67
6.52
9.012
1.661
T P
3c96_A
381
329
44
2.75
9.09
8.998
1.544
T P
2b2x_A
188
329
44
2.66
6.82
8.995
1.593
T P
1ido_A
184
329
44
2.60
4.55
8.938
1.627
T P
2qds_A
224
329
42
2.38
14.29
8.915
1.692
T P
1jlm_A
187
329
43
2.49
9.30
8.863
1.661
T P
3bqn_B
182
329
43
2.73
4.65
8.795
1.521
T P
1aox_A
201
329
45
2.70
2.22
8.755
1.608
T P
1qc5_A
192
329
40
2.43
10.00
8.624
1.584
T P
1n3y_A
189
329
41
2.74
4.88
8.524
1.445
T P
1dzi_A
185
329
41
2.54
14.63
8.478
1.554
T P
1mq9_A
173
329
43
2.82
6.98
8.418
1.472
T P
1mq8_B
177
329
44
2.76
4.55
8.270
1.540
T P
3e2m_A
182
329
41
2.83
9.76
8.118
1.400
T P
1ck4_B
194
329
42
2.70
7.14
8.093
1.501
T P
1m1u_A
184
329
39
2.66
2.56
8.007
1.412
T P
1qcy_A
193
329
42
2.71
0.00
7.988
1.494
T P
3bn3_A
180
329
38
2.53
7.89
7.855
1.448
T P
1bho_1
189
329
35
2.80
0.00
7.570
1.207
T P
1v7p_C
193
329
36
2.70
8.33
7.496
1.284
T P
1n9z_A
184
329
37
2.60
0.00
7.443
1.372
T P
2g23_A
587
329
35
2.82
8.57
7.425
1.201
T P
1t0p_A
174
329
40
2.84
7.50
7.370
1.361
T P
1mjn_A
179
329
33
2.57
0.00
7.114
1.238
T P
1xuo_A
181
329
32
2.37
9.38
6.897
1.298
T P
1rd4_A
184
329
33
2.77
3.03
6.550
1.152
T P
1mhp_B
192
329
32
2.69
6.25
6.534
1.148
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]