LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_476.5wLII_11346_83
Total number of 3D structures: 81
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1qzz_A
340
293
255
1.57
20.78
83.456
15.282
T P
1tw3_A
340
293
209
1.96
18.18
60.195
10.128
T P
1xds_A
336
293
201
1.94
19.90
59.830
9.861
T P
2r3s_A
330
293
189
2.07
16.40
53.370
8.703
T P
1fpx_A
345
293
183
1.99
16.39
51.701
8.750
T P
1fp2_A
345
293
182
1.95
16.48
51.636
8.892
T P
1kyz_E
361
293
179
2.16
13.97
50.995
7.922
T P
1fpq_A
333
293
156
1.82
19.87
48.932
8.116
T P
2ip2_A
330
293
154
1.83
18.18
47.464
7.987
T P
1fp1_D
340
293
162
2.18
18.52
46.930
7.118
T P
3dp7_A
351
293
187
2.44
11.76
45.359
7.354
T P
1wzn_A
244
293
148
2.03
25.00
43.414
6.949
T P
1zg3_A
358
293
143
1.88
23.08
43.284
7.222
T P
1zgj_A
354
293
144
1.83
22.92
43.141
7.473
T P
1x19_A
350
293
163
2.36
15.95
43.012
6.638
T P
3dh0_B
190
293
145
1.94
18.62
42.929
7.110
T P
1ve3_B
226
293
150
1.97
20.00
42.631
7.256
T P
3e8s_A
220
293
148
1.97
22.30
42.506
7.139
T P
3bus_A
251
293
144
1.87
22.92
41.318
7.315
T P
1zga_A
357
293
140
1.81
23.57
41.097
7.330
T P
2p7i_B
229
293
146
1.90
12.33
40.998
7.302
T P
2pjd_A
334
293
133
1.92
18.05
40.469
6.572
T P
3dlc_A
219
293
143
2.05
17.48
40.202
6.640
T P
3d2l_C
242
293
149
2.08
23.49
38.961
6.847
T P
2gh1_A
281
293
137
1.99
21.17
38.798
6.550
T P
2gs9_A
211
293
138
2.09
15.22
38.186
6.307
T P
1d2g_A
292
293
147
2.18
10.88
38.181
6.459
T P
3f4k_A
254
293
146
2.27
18.49
38.080
6.163
T P
1y8c_A
246
293
147
2.20
17.69
37.940
6.404
T P
3cgg_A
186
293
129
2.00
18.60
37.554
6.131
T P
1vlm_A
207
293
144
2.14
14.58
37.273
6.442
T P
1tpy_A
285
293
142
2.15
16.90
37.250
6.313
T P
2avn_A
247
293
144
2.12
18.06
37.225
6.478
T P
1xxl_A
234
293
135
1.98
18.52
36.972
6.480
T P
3e7p_A
253
293
139
2.20
19.42
36.959
6.044
T P
1kph_B
285
293
144
2.17
18.75
36.867
6.353
T P
1nv8_A
271
293
130
2.04
18.46
36.697
6.087
T P
1ri5_A
252
293
141
2.17
17.02
36.647
6.215
T P
1r74_B
279
293
144
2.01
11.11
36.530
6.827
T P
1r8x_B
284
293
151
2.16
11.26
36.390
6.685
T P
1vl5_A
231
293
133
1.97
17.29
36.357
6.428
T P
1sg9_A
274
293
131
2.06
16.79
36.328
6.069
T P
2o57_A
282
293
145
2.13
18.62
36.287
6.488
T P
2yqz_A
261
293
128
2.09
15.62
35.799
5.838
T P
3dtn_A
220
293
130
2.06
16.92
35.455
6.008
T P
2ex4_A
221
293
147
2.24
14.97
35.433
6.287
T P
1xva_A
292
293
146
2.11
10.27
35.342
6.611
T P
1l1e_A
272
293
142
2.17
19.72
35.339
6.256
T P
1vq1_A
266
293
133
2.15
16.54
35.320
5.905
T P
2p8j_B
207
293
134
2.14
17.16
35.170
5.981
T P
2qyo_A
353
293
142
2.30
15.49
35.059
5.926
T P
1kpg_A
285
293
147
2.27
19.05
34.956
6.211
T P
1kpi_A
291
293
144
2.31
15.97
34.793
5.970
T P
1f3l_A
321
293
127
2.04
21.26
34.789
5.928
T P
2fyt_A
311
293
126
2.04
22.22
34.783
5.899
T P
3ccf_B
242
293
129
2.02
22.48
34.754
6.089
T P
3bgv_B
271
293
142
2.28
14.79
34.631
5.958
T P
2fk8_A
281
293
140
2.23
15.00
34.570
6.021
T P
3ege_A
247
293
126
1.94
17.46
34.486
6.186
T P
3bxo_A
236
293
134
2.17
18.66
34.294
5.916
T P
2v74_D
332
293
122
2.07
18.85
34.275
5.629
T P
1im8_A
225
293
138
2.13
21.01
33.905
6.188
T P
3b3f_A
337
293
124
2.02
17.74
33.869
5.858
T P
3dli_A
221
293
146
2.25
15.07
33.636
6.210
T P
1nkv_C
249
293
119
2.12
21.01
33.123
5.349
T P
1p91_A
268
293
125
2.12
16.00
32.951
5.643
T P
3cc8_A
211
293
133
2.15
19.55
32.605
5.918
T P
1or8_A
313
293
118
2.11
18.64
32.520
5.343
T P
3bkw_A
219
293
131
2.21
23.66
32.478
5.667
T P
3cjt_A
254
293
128
2.21
21.88
31.862
5.541
T P
1g6q_1
328
293
121
2.04
18.18
31.765
5.646
T P
2as0_A
396
293
127
2.25
18.11
31.378
5.397
T P
3b3j_A
332
293
113
1.98
19.47
31.298
5.431
T P
1orh_A
318
293
118
2.04
16.10
31.240
5.517
T P
1ori_A
316
293
121
2.13
17.36
30.641
5.428
T P
2nxc_A
249
293
121
2.24
25.62
30.541
5.167
T P
3g5l_A
222
293
128
2.28
19.53
30.514
5.367
T P
1l3i_A
186
293
122
2.22
20.49
30.129
5.262
T P
2p35_A
245
293
117
2.19
23.93
29.134
5.116
T P
1m6y_A
293
293
98
1.95
21.43
28.570
4.772
T P
1jmr_B
247
293
58
2.57
10.34
14.415
2.175
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]