LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_478.5wLII_11346_90
Total number of 3D structures: 54
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2otd_A
245
207
177
0.53
20.34
85.094
27.896
T P
2pz0_B
243
207
167
1.61
16.77
76.612
9.787
T P
2oog_D
268
207
167
1.74
14.97
73.593
9.075
T P
1ydy_A
328
207
163
1.78
11.66
72.195
8.693
T P
1zcc_A
240
207
160
1.68
11.88
72.027
8.988
T P
1t8q_B
329
207
162
1.75
11.73
71.928
8.734
T P
3ch0_A
272
207
163
1.84
10.43
70.885
8.387
T P
1vd6_A
218
207
153
1.62
19.61
68.294
8.882
T P
1o1z_A
226
207
148
1.80
13.51
65.419
7.797
T P
2o55_A
254
207
162
2.01
14.20
60.479
7.684
T P
1xx1_A
285
207
115
2.32
11.30
36.702
4.747
T P
1djx_B
561
207
103
2.16
8.74
36.671
4.551
T P
2zkm_X
708
207
105
2.23
6.67
36.567
4.497
T P
1qas_A
505
207
102
2.14
10.78
36.171
4.545
T P
1xrt_A
369
207
99
2.18
8.08
33.106
4.349
T P
1k1d_A
459
207
101
2.48
4.95
31.343
3.912
T P
3d6n_A
422
207
95
2.30
9.47
31.307
3.953
T P
1yny_B
459
207
98
2.39
7.14
31.037
3.940
T P
1v4y_A
474
207
98
2.41
10.20
30.622
3.899
T P
1ybq_A
389
207
100
2.42
4.00
30.586
3.974
T P
3e74_B
432
207
98
2.44
6.12
30.400
3.855
T P
2fty_A
531
207
96
2.43
3.12
30.282
3.791
T P
2qt3_A
401
207
97
2.33
11.34
30.060
3.992
T P
1m7j_A
474
207
100
2.58
5.00
30.053
3.730
T P
2g3f_A
414
207
100
2.72
12.00
30.051
3.551
T P
1gkp_A
457
207
91
2.36
7.69
29.823
3.701
T P
1rk6_A
474
207
94
2.55
5.32
29.689
3.553
T P
1nfg_A
456
207
96
2.51
8.33
29.386
3.678
T P
1ybq_B
388
207
92
2.27
6.52
29.199
3.890
T P
1a5l_C
536
207
89
2.34
6.74
29.176
3.648
T P
1ejx_C
555
207
87
2.28
6.90
28.936
3.662
T P
2ogj_A
378
207
83
2.35
8.43
28.631
3.388
T P
1rjq_A
474
207
95
2.64
11.58
28.356
3.470
T P
1onw_B
379
207
92
2.55
5.43
28.096
3.475
T P
1a5k_C
566
207
92
2.47
9.78
27.636
3.581
T P
1e9y_B
568
207
93
2.55
3.23
27.383
3.505
T P
1a5m_C
566
207
92
2.54
8.70
27.268
3.486
T P
1ejt_C
565
207
93
2.58
9.68
27.204
3.467
T P
1ejr_C
552
207
92
2.55
9.78
27.093
3.468
T P
1fwf_C
550
207
90
2.55
8.89
27.046
3.393
T P
1krb_C
565
207
90
2.50
10.00
27.012
3.459
T P
4ubp_C
569
207
91
2.58
5.49
26.928
3.401
T P
1eju_C
552
207
92
2.62
7.61
26.770
3.378
T P
1krc_C
566
207
90
2.58
8.89
26.561
3.357
T P
1ejs_C
565
207
90
2.56
7.78
26.495
3.379
T P
2kau_C
565
207
89
2.50
8.99
26.376
3.420
T P
1ie7_C
569
207
86
2.46
6.98
25.574
3.362
T P
1fwh_C
565
207
80
2.38
8.75
25.285
3.231
T P
1e9z_B
568
207
80
2.41
6.25
25.258
3.192
T P
1fwa_C
565
207
81
2.44
8.64
25.158
3.192
T P
1fwg_C
565
207
78
2.42
8.97
25.069
3.100
T P
1ejv_C
552
207
75
2.40
13.33
24.368
3.005
T P
1ef2_A
565
207
79
2.45
8.86
24.331
3.102
T P
2fjl_A
150
207
44
2.59
11.36
14.460
1.636
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]