LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_484.5wLII_11346_133
Total number of 3D structures: 32
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1b0n_A
103
71
65
0.62
12.31
90.919
9.040
T P
1adr_A
76
71
67
1.62
14.93
88.998
3.904
T P
3f52_E
78
71
67
1.56
8.96
88.158
4.028
T P
2b5a_A
77
71
66
1.67
9.09
87.139
3.730
T P
1y9q_A
178
71
64
1.52
14.06
86.963
3.959
T P
1y7y_A
69
71
63
1.38
9.52
85.613
4.264
T P
2r1j_L
66
71
64
1.40
14.06
85.557
4.269
T P
2bnm_A
194
71
65
1.73
9.23
85.125
3.553
T P
1r69_A
63
71
63
1.44
7.94
84.334
4.091
T P
2cro_A
65
71
63
1.59
9.52
83.840
3.722
T P
1r63_A
63
71
62
1.60
8.06
82.944
3.650
T P
3clc_B
77
71
61
1.63
8.20
82.456
3.530
T P
1sq8_A
64
71
63
1.67
11.11
82.018
3.551
T P
2qfc_A
284
71
63
1.66
15.87
81.789
3.584
T P
1x57_A
91
71
59
1.40
5.08
81.573
3.921
T P
1lli_B
92
71
63
1.84
6.35
81.406
3.249
T P
1utx_A
66
71
61
1.52
9.84
81.289
3.758
T P
2r63_A
63
71
62
1.68
8.06
81.252
3.491
T P
2ewt_A
71
71
64
2.02
12.50
80.190
3.024
T P
3eus_A
85
71
61
1.72
6.56
79.741
3.350
T P
3bs3_A
62
71
62
1.78
4.84
79.293
3.298
T P
2jvl_A
107
71
60
1.60
13.33
78.367
3.520
T P
2ef8_A
84
71
61
1.86
8.20
77.846
3.107
T P
3dnv_B
71
71
59
1.83
8.47
75.587
3.051
T P
2k9q_A
77
71
41
2.46
9.76
45.785
1.602
T P
1z26_A
716
71
40
2.80
2.50
38.618
1.381
T P
1u04_A
713
71
43
2.68
4.65
38.543
1.544
T P
2p5t_E
95
71
38
2.39
10.53
37.964
1.524
T P
2dpm_A
258
71
30
2.63
0.00
28.792
1.098
T P
2ras_B
204
71
26
2.24
7.69
26.873
1.111
T P
1gg1_B
343
71
24
3.01
8.33
24.602
0.771
T P
3g7u_A
348
71
17
2.57
11.76
18.887
0.638
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]