LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_486.5wLII_11346_138
Total number of 3D structures: 70
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1nir_B
539
149
101
1.49
20.79
65.648
6.347
T P
1e2r_B
543
149
98
1.38
16.33
62.416
6.608
T P
1hzu_A
521
149
94
1.27
19.15
62.134
6.879
T P
1hzv_A
514
149
92
1.76
19.57
57.150
4.949
T P
1gq1_A
559
149
86
1.61
13.95
54.963
5.015
T P
1qks_A
559
149
86
1.61
15.12
54.722
5.030
T P
1hj5_A
559
149
85
1.57
12.94
54.159
5.081
T P
2d0w_A
168
149
79
1.70
16.46
48.875
4.393
T P
2gc4_D
147
149
78
1.68
19.23
48.511
4.371
T P
1mg2_D
147
149
78
1.70
19.23
48.148
4.334
T P
1ls9_A
91
149
77
1.81
19.48
46.907
4.023
T P
1yiq_A
684
149
80
2.01
18.75
46.887
3.787
T P
2zbo_A
86
149
74
1.77
22.97
46.220
3.956
T P
1ctj_A
89
149
74
1.76
21.62
46.064
3.981
T P
1c6r_A
88
149
74
1.79
20.27
45.741
3.917
T P
1umm_A
149
149
76
1.87
18.42
45.550
3.850
T P
1cyj_A
90
149
74
1.85
20.27
45.517
3.788
T P
2dge_A
102
149
77
1.76
18.18
43.838
4.139
T P
1dt1_A
129
149
72
1.83
16.67
43.745
3.733
T P
2fwl_A
129
149
71
1.83
16.90
43.548
3.672
T P
2v07_A
98
149
75
1.85
17.33
42.605
3.843
T P
2ce0_A
99
149
76
1.87
18.42
42.548
3.863
T P
1kv9_A
664
149
81
1.95
16.05
41.907
3.953
T P
2b12_B
108
149
68
1.85
17.65
41.780
3.479
T P
2v08_A
84
149
74
1.71
24.32
41.711
4.081
T P
1f1c_A
129
149
77
1.97
20.78
41.549
3.718
T P
1gdv_A
85
149
75
1.87
25.33
41.519
3.815
T P
1c52_A
131
149
73
2.11
16.44
40.368
3.310
T P
1m70_A
190
149
78
2.02
17.95
40.071
3.683
T P
1kib_A
89
149
74
1.96
24.32
39.942
3.598
T P
1f1f_A
88
149
73
1.90
23.29
39.633
3.650
T P
1csu_A
108
149
71
1.92
21.13
39.243
3.512
T P
3cp5_A
116
149
75
2.00
18.67
39.142
3.574
T P
1c6s_A
87
149
76
2.10
22.37
38.873
3.453
T P
1irv_A
108
149
72
2.02
19.44
38.717
3.393
T P
1kb0_A
669
149
81
2.29
17.28
38.532
3.394
T P
1csv_A
108
149
68
1.85
20.59
38.318
3.487
T P
1i54_A
103
149
72
1.94
22.22
38.204
3.521
T P
1foc_A
128
149
71
1.89
15.49
38.179
3.559
T P
1rap_A
108
149
69
1.91
21.74
38.166
3.429
T P
1co6_A
107
149
70
2.01
15.71
38.074
3.317
T P
2aiu_A
104
149
72
1.97
16.67
38.039
3.485
T P
1raq_A
108
149
72
1.96
20.83
38.020
3.491
T P
1chj_A
108
149
72
2.00
20.83
37.901
3.423
T P
1cyc_A
103
149
67
1.78
20.90
37.799
3.570
T P
1wej_F
104
149
71
1.96
18.31
37.717
3.447
T P
1yeb_A
108
149
67
1.87
19.40
37.707
3.402
T P
1ccr_A
111
149
71
1.99
16.90
37.600
3.405
T P
1wve_C
75
149
68
2.00
22.06
37.396
3.231
T P
2jti_B
103
149
66
1.83
18.18
37.275
3.421
T P
1csw_A
108
149
70
2.04
20.00
36.990
3.275
T P
3cx5_W
108
149
71
1.96
19.72
36.861
3.453
T P
1h1o_A
172
149
76
2.10
22.37
36.695
3.453
T P
1ycc_A
108
149
69
1.97
20.29
36.660
3.340
T P
2jqr_A
108
149
69
1.97
20.29
36.660
3.340
T P
2b4z_A
104
149
67
1.91
16.42
36.587
3.331
T P
1w2l_A
97
149
69
1.93
7.25
36.465
3.400
T P
2ycc_A
108
149
71
2.01
19.72
36.341
3.366
T P
1hro_A
105
149
68
1.94
16.18
35.826
3.326
T P
1ctz_A
108
149
67
2.02
17.91
35.696
3.167
T P
2b11_B
108
149
67
2.00
16.42
35.234
3.184
T P
1chi_A
108
149
69
1.97
20.29
34.716
3.333
T P
1yfc_A
108
149
66
1.98
16.67
34.366
3.166
T P
1irw_A
108
149
69
2.09
20.29
33.963
3.147
T P
1chh_A
108
149
67
2.05
19.40
33.397
3.116
T P
1j3s_A
104
149
70
2.15
17.14
33.299
3.109
T P
1fcd_C
174
149
68
2.29
16.18
33.258
2.843
T P
2bcn_B
108
149
65
2.01
16.92
32.335
3.077
T P
1kx2_A
81
149
64
1.94
20.31
31.737
3.142
T P
1lms_A
95
149
48
2.37
18.75
22.814
1.941
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]