LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_499.5wLII_11364_20
Total number of 3D structures: 41
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1ses_A |
421 |
184 |
123 |
1.87 |
15.45 |
60.563 |
6.247 |
T P |
1wle_B |
469 |
184 |
128 |
1.98 |
11.72 |
54.193 |
6.142 |
T P |
2dq0_A |
447 |
184 |
126 |
2.12 |
11.11 |
52.965 |
5.686 |
T P |
2dq3_A |
425 |
184 |
108 |
2.42 |
17.59 |
45.141 |
4.282 |
T P |
2v1y_B |
170 |
184 |
83 |
1.39 |
3.61 |
44.081 |
5.566 |
T P |
2iw5_A |
666 |
184 |
81 |
1.86 |
13.58 |
41.025 |
4.135 |
T P |
2b5u_A |
470 |
184 |
82 |
1.74 |
14.63 |
40.569 |
4.449 |
T P |
2v1d_A |
666 |
184 |
80 |
1.83 |
13.75 |
40.224 |
4.146 |
T P |
1y1u_A |
544 |
184 |
85 |
2.02 |
8.24 |
40.181 |
4.003 |
T P |
2h94_A |
647 |
184 |
84 |
2.09 |
14.29 |
39.909 |
3.835 |
T P |
2rd0_B |
139 |
184 |
77 |
1.56 |
6.49 |
39.421 |
4.628 |
T P |
1jch_A |
468 |
184 |
83 |
1.93 |
13.25 |
39.375 |
4.082 |
T P |
2hko_A |
647 |
184 |
82 |
2.03 |
15.85 |
38.737 |
3.849 |
T P |
1cii_A |
602 |
184 |
82 |
2.04 |
10.98 |
38.673 |
3.834 |
T P |
1bg1_A |
559 |
184 |
75 |
1.77 |
9.33 |
37.654 |
4.009 |
T P |
2dw4_A |
634 |
184 |
77 |
1.90 |
20.78 |
37.489 |
3.845 |
T P |
2z3y_A |
643 |
184 |
79 |
2.15 |
12.66 |
37.396 |
3.516 |
T P |
3cwg_B |
507 |
184 |
82 |
2.04 |
9.76 |
36.980 |
3.832 |
T P |
1qvr_A |
803 |
184 |
73 |
1.57 |
16.44 |
36.868 |
4.380 |
T P |
2ch7_A |
309 |
184 |
71 |
1.54 |
7.04 |
36.368 |
4.325 |
T P |
1lrz_A |
400 |
184 |
63 |
1.59 |
11.11 |
32.878 |
3.727 |
T P |
2v5d_A |
722 |
184 |
64 |
1.72 |
4.69 |
32.740 |
3.519 |
T P |
2ch7_B |
307 |
184 |
71 |
2.33 |
8.45 |
30.241 |
2.926 |
T P |
1deq_A |
180 |
184 |
60 |
1.97 |
5.00 |
28.714 |
2.895 |
T P |
1h6k_C |
733 |
184 |
67 |
2.23 |
4.48 |
28.140 |
2.881 |
T P |
2d3e_A |
130 |
184 |
47 |
1.64 |
17.02 |
23.864 |
2.699 |
T P |
2efr_A |
155 |
184 |
47 |
1.78 |
17.02 |
23.495 |
2.502 |
T P |
2v71_A |
160 |
184 |
47 |
1.83 |
17.02 |
22.716 |
2.439 |
T P |
1c1g_A |
284 |
184 |
47 |
1.75 |
12.77 |
22.708 |
2.535 |
T P |
2b9c_B |
142 |
184 |
46 |
1.95 |
17.39 |
22.265 |
2.244 |
T P |
1m1j_C |
390 |
184 |
50 |
2.12 |
6.00 |
22.115 |
2.251 |
T P |
1ic2_A |
79 |
184 |
47 |
1.99 |
10.64 |
21.678 |
2.253 |
T P |
2fxm_A |
126 |
184 |
46 |
2.01 |
19.57 |
21.575 |
2.181 |
T P |
2fxo_A |
129 |
184 |
46 |
1.80 |
15.22 |
21.571 |
2.418 |
T P |
2wb7_A |
525 |
184 |
51 |
2.33 |
7.84 |
20.927 |
2.096 |
T P |
1f5n_A |
570 |
184 |
56 |
2.82 |
10.71 |
19.705 |
1.917 |
T P |
1ha0_A |
494 |
184 |
51 |
2.43 |
5.88 |
19.191 |
2.016 |
T P |
2inr_A |
442 |
184 |
44 |
2.48 |
9.09 |
17.916 |
1.704 |
T P |
1deq_C |
370 |
184 |
49 |
2.74 |
6.12 |
16.694 |
1.728 |
T P |
1ei3_C |
397 |
184 |
46 |
2.63 |
4.35 |
16.311 |
1.683 |
T P |
1m1j_B |
402 |
184 |
41 |
2.58 |
0.00 |
15.455 |
1.530 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]