LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_5.5wLII_08970_2
Total number of 3D structures: 94
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1m70_A
190
206
181
1.01
17.13
85.820
16.314
T P
1h1o_A
172
206
152
1.53
16.45
70.459
9.323
T P
1fcd_C
174
206
152
2.03
13.82
58.023
7.135
T P
1cno_G
87
206
77
1.31
22.08
36.352
5.477
T P
1c53_A
79
206
75
1.51
20.00
34.713
4.655
T P
1dvh_A
79
206
75
1.48
20.00
34.196
4.756
T P
2dvh_A
79
206
73
1.69
20.55
32.888
4.083
T P
1e2r_B
543
206
76
2.23
23.68
29.172
3.267
T P
1gq1_A
559
206
66
1.88
24.24
28.945
3.333
T P
1qks_A
559
206
66
1.87
24.24
28.925
3.342
T P
1hzu_A
521
206
75
2.20
24.00
28.603
3.262
T P
2vhd_A
323
206
83
2.49
16.87
28.413
3.206
T P
1iqc_A
308
206
85
2.54
12.94
28.207
3.219
T P
1kv9_A
664
206
80
2.26
18.75
27.593
3.393
T P
1umm_A
149
206
71
1.96
15.49
27.315
3.439
T P
1e08_E
78
206
70
1.96
18.57
26.932
3.396
T P
2c1v_A
335
206
75
2.25
8.00
26.694
3.191
T P
2gc4_D
147
206
70
2.01
20.00
26.389
3.325
T P
1yiq_A
684
206
84
2.53
13.10
26.378
3.196
T P
1zzh_B
308
206
75
2.26
17.33
26.373
3.178
T P
1mg2_D
147
206
72
2.11
22.22
26.274
3.252
T P
1c52_A
131
206
69
1.95
24.64
26.196
3.373
T P
2c1d_A
264
206
77
2.38
19.48
25.941
3.104
T P
2d0w_A
168
206
75
2.22
17.33
25.795
3.231
T P
3cp5_A
116
206
74
2.18
9.46
25.533
3.249
T P
1ls9_A
91
206
69
2.02
14.49
25.148
3.247
T P
1kb0_A
669
206
77
2.40
14.29
25.121
3.079
T P
1nir_B
539
206
76
2.36
25.00
25.119
3.092
T P
2zbo_A
86
206
69
2.07
20.29
25.085
3.176
T P
1h32_A
261
206
75
2.35
22.67
24.928
3.063
T P
2ce0_A
99
206
66
1.90
18.18
24.855
3.293
T P
1foc_A
128
206
66
1.93
25.76
24.816
3.258
T P
1dt1_A
129
206
64
1.90
28.12
24.814
3.206
T P
2v07_A
98
206
67
2.01
16.42
24.671
3.171
T P
2dge_A
102
206
68
2.18
16.18
24.527
2.984
T P
2v08_A
84
206
69
2.04
24.64
24.526
3.226
T P
1nml_A
316
206
75
2.66
18.67
24.228
2.722
T P
1w2l_A
97
206
69
2.10
18.84
24.138
3.136
T P
1gdv_A
85
206
69
2.11
23.19
24.021
3.124
T P
1c6s_A
87
206
67
2.10
26.87
23.820
3.044
T P
1ctj_A
89
206
66
2.02
22.73
23.660
3.120
T P
2c1d_B
137
206
69
2.25
21.74
23.618
2.931
T P
2b4z_A
104
206
67
2.08
16.42
23.505
3.080
T P
1c6r_A
88
206
66
2.15
25.76
23.444
2.928
T P
1kib_A
89
206
65
2.18
20.00
23.439
2.851
T P
1f1f_A
88
206
66
2.20
22.73
23.392
2.870
T P
2b10_B
108
206
69
2.42
15.94
22.693
2.734
T P
2fwl_A
129
206
64
2.23
12.50
22.467
2.745
T P
1ccr_A
111
206
63
2.11
19.05
22.461
2.850
T P
1i54_A
103
206
64
2.25
21.88
22.220
2.724
T P
1wve_C
75
206
61
2.03
24.59
22.096
2.865
T P
3cx5_W
108
206
64
2.23
12.50
22.079
2.742
T P
2b0z_B
108
206
64
2.28
14.06
22.030
2.684
T P
1crh_A
108
206
63
2.17
12.70
22.008
2.773
T P
1csu_A
108
206
63
2.22
12.70
21.951
2.712
T P
1s6v_B
108
206
65
2.31
12.31
21.932
2.702
T P
1ctz_A
108
206
63
2.14
11.11
21.792
2.816
T P
1cig_A
108
206
62
2.17
11.29
21.788
2.733
T P
2aiu_A
104
206
64
2.25
12.50
21.770
2.724
T P
1ycc_A
108
206
62
2.16
11.29
21.761
2.747
T P
2jqr_A
108
206
62
2.16
11.29
21.761
2.747
T P
2b12_B
108
206
62
2.17
12.90
21.750
2.736
T P
1csv_A
108
206
61
2.13
13.11
21.730
2.737
T P
1chj_A
108
206
61
2.10
11.48
21.728
2.776
T P
1irw_A
108
206
62
2.14
11.29
21.722
2.764
T P
1chi_A
108
206
62
2.15
14.52
21.692
2.750
T P
1irv_A
108
206
64
2.26
10.94
21.681
2.710
T P
1csw_A
108
206
62
2.19
14.52
21.677
2.710
T P
3cxh_W
112
206
62
2.16
12.90
21.660
2.747
T P
1crg_A
108
206
61
2.09
11.48
21.653
2.787
T P
1yea_A
112
206
64
2.38
7.81
21.497
2.578
T P
1cie_A
108
206
61
2.14
13.11
21.487
2.727
T P
1ytc_A
112
206
61
2.18
13.11
21.470
2.677
T P
1yfc_A
108
206
62
2.24
12.90
21.464
2.649
T P
1raq_A
108
206
59
2.03
11.86
21.446
2.764
T P
2jti_B
103
206
62
2.24
12.90
21.325
2.648
T P
2b11_B
108
206
61
2.18
13.11
21.321
2.676
T P
1hro_A
105
206
62
2.25
20.97
21.292
2.638
T P
1yeb_A
108
206
63
2.45
15.87
21.269
2.473
T P
1j3s_A
104
206
65
2.43
10.77
21.210
2.571
T P
1chh_A
108
206
63
2.39
9.52
21.073
2.528
T P
1cri_A
108
206
59
2.19
6.78
20.969
2.573
T P
1wej_F
104
206
60
2.31
16.67
20.516
2.491
T P
2ycc_A
108
206
61
2.34
9.84
20.440
2.502
T P
1cyc_A
103
206
60
2.22
13.33
20.345
2.587
T P
2bcn_B
108
206
57
2.28
7.02
19.998
2.399
T P
1kx2_A
81
206
57
2.09
8.77
19.868
2.598
T P
1cc5_A
83
206
57
2.37
10.53
19.428
2.305
T P
1rap_A
108
206
57
2.37
8.77
19.357
2.310
T P
1fhb_A
108
206
58
2.67
6.90
18.054
2.091
T P
1cyj_A
90
206
42
2.07
21.43
17.869
1.938
T P
1hzv_A
514
206
51
2.64
7.84
17.361
1.861
T P
1lms_A
95
206
50
2.68
10.00
15.615
1.799
T P
1hj5_A
559
206
48
2.91
14.58
14.118
1.596
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]