LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_5.5wLII_08970_2
Total number of 3D structures: 94
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1m70_A |
190 |
206 |
181 |
1.01 |
17.13 |
85.820 |
16.314 |
T P |
1h1o_A |
172 |
206 |
152 |
1.53 |
16.45 |
70.459 |
9.323 |
T P |
1fcd_C |
174 |
206 |
152 |
2.03 |
13.82 |
58.023 |
7.135 |
T P |
1cno_G |
87 |
206 |
77 |
1.31 |
22.08 |
36.352 |
5.477 |
T P |
1c53_A |
79 |
206 |
75 |
1.51 |
20.00 |
34.713 |
4.655 |
T P |
1dvh_A |
79 |
206 |
75 |
1.48 |
20.00 |
34.196 |
4.756 |
T P |
2dvh_A |
79 |
206 |
73 |
1.69 |
20.55 |
32.888 |
4.083 |
T P |
1e2r_B |
543 |
206 |
76 |
2.23 |
23.68 |
29.172 |
3.267 |
T P |
1gq1_A |
559 |
206 |
66 |
1.88 |
24.24 |
28.945 |
3.333 |
T P |
1qks_A |
559 |
206 |
66 |
1.87 |
24.24 |
28.925 |
3.342 |
T P |
1hzu_A |
521 |
206 |
75 |
2.20 |
24.00 |
28.603 |
3.262 |
T P |
2vhd_A |
323 |
206 |
83 |
2.49 |
16.87 |
28.413 |
3.206 |
T P |
1iqc_A |
308 |
206 |
85 |
2.54 |
12.94 |
28.207 |
3.219 |
T P |
1kv9_A |
664 |
206 |
80 |
2.26 |
18.75 |
27.593 |
3.393 |
T P |
1umm_A |
149 |
206 |
71 |
1.96 |
15.49 |
27.315 |
3.439 |
T P |
1e08_E |
78 |
206 |
70 |
1.96 |
18.57 |
26.932 |
3.396 |
T P |
2c1v_A |
335 |
206 |
75 |
2.25 |
8.00 |
26.694 |
3.191 |
T P |
2gc4_D |
147 |
206 |
70 |
2.01 |
20.00 |
26.389 |
3.325 |
T P |
1yiq_A |
684 |
206 |
84 |
2.53 |
13.10 |
26.378 |
3.196 |
T P |
1zzh_B |
308 |
206 |
75 |
2.26 |
17.33 |
26.373 |
3.178 |
T P |
1mg2_D |
147 |
206 |
72 |
2.11 |
22.22 |
26.274 |
3.252 |
T P |
1c52_A |
131 |
206 |
69 |
1.95 |
24.64 |
26.196 |
3.373 |
T P |
2c1d_A |
264 |
206 |
77 |
2.38 |
19.48 |
25.941 |
3.104 |
T P |
2d0w_A |
168 |
206 |
75 |
2.22 |
17.33 |
25.795 |
3.231 |
T P |
3cp5_A |
116 |
206 |
74 |
2.18 |
9.46 |
25.533 |
3.249 |
T P |
1ls9_A |
91 |
206 |
69 |
2.02 |
14.49 |
25.148 |
3.247 |
T P |
1kb0_A |
669 |
206 |
77 |
2.40 |
14.29 |
25.121 |
3.079 |
T P |
1nir_B |
539 |
206 |
76 |
2.36 |
25.00 |
25.119 |
3.092 |
T P |
2zbo_A |
86 |
206 |
69 |
2.07 |
20.29 |
25.085 |
3.176 |
T P |
1h32_A |
261 |
206 |
75 |
2.35 |
22.67 |
24.928 |
3.063 |
T P |
2ce0_A |
99 |
206 |
66 |
1.90 |
18.18 |
24.855 |
3.293 |
T P |
1foc_A |
128 |
206 |
66 |
1.93 |
25.76 |
24.816 |
3.258 |
T P |
1dt1_A |
129 |
206 |
64 |
1.90 |
28.12 |
24.814 |
3.206 |
T P |
2v07_A |
98 |
206 |
67 |
2.01 |
16.42 |
24.671 |
3.171 |
T P |
2dge_A |
102 |
206 |
68 |
2.18 |
16.18 |
24.527 |
2.984 |
T P |
2v08_A |
84 |
206 |
69 |
2.04 |
24.64 |
24.526 |
3.226 |
T P |
1nml_A |
316 |
206 |
75 |
2.66 |
18.67 |
24.228 |
2.722 |
T P |
1w2l_A |
97 |
206 |
69 |
2.10 |
18.84 |
24.138 |
3.136 |
T P |
1gdv_A |
85 |
206 |
69 |
2.11 |
23.19 |
24.021 |
3.124 |
T P |
1c6s_A |
87 |
206 |
67 |
2.10 |
26.87 |
23.820 |
3.044 |
T P |
1ctj_A |
89 |
206 |
66 |
2.02 |
22.73 |
23.660 |
3.120 |
T P |
2c1d_B |
137 |
206 |
69 |
2.25 |
21.74 |
23.618 |
2.931 |
T P |
2b4z_A |
104 |
206 |
67 |
2.08 |
16.42 |
23.505 |
3.080 |
T P |
1c6r_A |
88 |
206 |
66 |
2.15 |
25.76 |
23.444 |
2.928 |
T P |
1kib_A |
89 |
206 |
65 |
2.18 |
20.00 |
23.439 |
2.851 |
T P |
1f1f_A |
88 |
206 |
66 |
2.20 |
22.73 |
23.392 |
2.870 |
T P |
2b10_B |
108 |
206 |
69 |
2.42 |
15.94 |
22.693 |
2.734 |
T P |
2fwl_A |
129 |
206 |
64 |
2.23 |
12.50 |
22.467 |
2.745 |
T P |
1ccr_A |
111 |
206 |
63 |
2.11 |
19.05 |
22.461 |
2.850 |
T P |
1i54_A |
103 |
206 |
64 |
2.25 |
21.88 |
22.220 |
2.724 |
T P |
1wve_C |
75 |
206 |
61 |
2.03 |
24.59 |
22.096 |
2.865 |
T P |
3cx5_W |
108 |
206 |
64 |
2.23 |
12.50 |
22.079 |
2.742 |
T P |
2b0z_B |
108 |
206 |
64 |
2.28 |
14.06 |
22.030 |
2.684 |
T P |
1crh_A |
108 |
206 |
63 |
2.17 |
12.70 |
22.008 |
2.773 |
T P |
1csu_A |
108 |
206 |
63 |
2.22 |
12.70 |
21.951 |
2.712 |
T P |
1s6v_B |
108 |
206 |
65 |
2.31 |
12.31 |
21.932 |
2.702 |
T P |
1ctz_A |
108 |
206 |
63 |
2.14 |
11.11 |
21.792 |
2.816 |
T P |
1cig_A |
108 |
206 |
62 |
2.17 |
11.29 |
21.788 |
2.733 |
T P |
2aiu_A |
104 |
206 |
64 |
2.25 |
12.50 |
21.770 |
2.724 |
T P |
1ycc_A |
108 |
206 |
62 |
2.16 |
11.29 |
21.761 |
2.747 |
T P |
2jqr_A |
108 |
206 |
62 |
2.16 |
11.29 |
21.761 |
2.747 |
T P |
2b12_B |
108 |
206 |
62 |
2.17 |
12.90 |
21.750 |
2.736 |
T P |
1csv_A |
108 |
206 |
61 |
2.13 |
13.11 |
21.730 |
2.737 |
T P |
1chj_A |
108 |
206 |
61 |
2.10 |
11.48 |
21.728 |
2.776 |
T P |
1irw_A |
108 |
206 |
62 |
2.14 |
11.29 |
21.722 |
2.764 |
T P |
1chi_A |
108 |
206 |
62 |
2.15 |
14.52 |
21.692 |
2.750 |
T P |
1irv_A |
108 |
206 |
64 |
2.26 |
10.94 |
21.681 |
2.710 |
T P |
1csw_A |
108 |
206 |
62 |
2.19 |
14.52 |
21.677 |
2.710 |
T P |
3cxh_W |
112 |
206 |
62 |
2.16 |
12.90 |
21.660 |
2.747 |
T P |
1crg_A |
108 |
206 |
61 |
2.09 |
11.48 |
21.653 |
2.787 |
T P |
1yea_A |
112 |
206 |
64 |
2.38 |
7.81 |
21.497 |
2.578 |
T P |
1cie_A |
108 |
206 |
61 |
2.14 |
13.11 |
21.487 |
2.727 |
T P |
1ytc_A |
112 |
206 |
61 |
2.18 |
13.11 |
21.470 |
2.677 |
T P |
1yfc_A |
108 |
206 |
62 |
2.24 |
12.90 |
21.464 |
2.649 |
T P |
1raq_A |
108 |
206 |
59 |
2.03 |
11.86 |
21.446 |
2.764 |
T P |
2jti_B |
103 |
206 |
62 |
2.24 |
12.90 |
21.325 |
2.648 |
T P |
2b11_B |
108 |
206 |
61 |
2.18 |
13.11 |
21.321 |
2.676 |
T P |
1hro_A |
105 |
206 |
62 |
2.25 |
20.97 |
21.292 |
2.638 |
T P |
1yeb_A |
108 |
206 |
63 |
2.45 |
15.87 |
21.269 |
2.473 |
T P |
1j3s_A |
104 |
206 |
65 |
2.43 |
10.77 |
21.210 |
2.571 |
T P |
1chh_A |
108 |
206 |
63 |
2.39 |
9.52 |
21.073 |
2.528 |
T P |
1cri_A |
108 |
206 |
59 |
2.19 |
6.78 |
20.969 |
2.573 |
T P |
1wej_F |
104 |
206 |
60 |
2.31 |
16.67 |
20.516 |
2.491 |
T P |
2ycc_A |
108 |
206 |
61 |
2.34 |
9.84 |
20.440 |
2.502 |
T P |
1cyc_A |
103 |
206 |
60 |
2.22 |
13.33 |
20.345 |
2.587 |
T P |
2bcn_B |
108 |
206 |
57 |
2.28 |
7.02 |
19.998 |
2.399 |
T P |
1kx2_A |
81 |
206 |
57 |
2.09 |
8.77 |
19.868 |
2.598 |
T P |
1cc5_A |
83 |
206 |
57 |
2.37 |
10.53 |
19.428 |
2.305 |
T P |
1rap_A |
108 |
206 |
57 |
2.37 |
8.77 |
19.357 |
2.310 |
T P |
1fhb_A |
108 |
206 |
58 |
2.67 |
6.90 |
18.054 |
2.091 |
T P |
1cyj_A |
90 |
206 |
42 |
2.07 |
21.43 |
17.869 |
1.938 |
T P |
1hzv_A |
514 |
206 |
51 |
2.64 |
7.84 |
17.361 |
1.861 |
T P |
1lms_A |
95 |
206 |
50 |
2.68 |
10.00 |
15.615 |
1.799 |
T P |
1hj5_A |
559 |
206 |
48 |
2.91 |
14.58 |
14.118 |
1.596 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]