LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_504.5wLII_11364_42
Total number of 3D structures: 42
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2vpz_A
734
100
77
1.35
28.57
73.842
5.325
T P
2nya_A
791
100
74
1.85
18.92
66.218
3.804
T P
2e7z_A
727
100
79
2.12
6.33
65.835
3.558
T P
1h0h_A
976
100
77
1.98
15.58
65.439
3.710
T P
1kqf_A
981
100
75
2.02
14.67
63.424
3.544
T P
2ivf_A
912
100
73
2.06
9.59
61.847
3.381
T P
1ti6_A
875
100
73
2.06
9.59
60.945
3.377
T P
1eu1_A
767
100
70
1.98
11.43
58.755
3.368
T P
1y5i_A
1244
100
72
2.08
11.11
58.555
3.297
T P
1q16_A
1244
100
71
2.03
11.27
58.489
3.336
T P
1ogy_A
789
100
75
2.03
14.67
58.090
3.525
T P
1e61_C
767
100
69
1.99
7.25
57.847
3.307
T P
1cxs_A
768
100
70
2.01
11.43
55.809
3.321
T P
2v3v_A
721
100
73
2.19
15.07
55.795
3.194
T P
4dmr_A
773
100
70
2.04
8.57
55.202
3.267
T P
1g8k_A
822
100
72
2.22
15.28
55.053
3.098
T P
2nap_A
720
100
74
2.21
16.22
55.028
3.208
T P
1dmr_A
779
100
69
2.02
7.25
54.711
3.250
T P
1e18_A
779
100
69
2.03
7.25
54.707
3.243
T P
2iv2_X
696
100
73
2.22
8.22
54.538
3.153
T P
1tmo_A
794
100
69
2.04
14.49
52.382
3.225
T P
1dms_A
766
100
71
2.11
7.04
52.112
3.215
T P
1g8j_C
821
100
70
2.41
14.29
51.093
2.793
T P
2fug_3
737
100
43
2.35
13.95
31.912
1.754
T P
1h95_A
79
100
24
2.15
4.17
19.810
1.065
T P
2i5m_X
66
100
23
2.12
13.04
19.072
1.038
T P
1hz9_A
66
100
24
2.40
16.67
18.890
0.961
T P
1mjc_A
69
100
22
1.91
4.55
18.876
1.093
T P
1mef
70
100
25
2.45
4.00
18.875
0.982
T P
1i5f_A
66
100
23
2.21
8.70
18.657
0.995
T P
2bh8_B
86
100
25
2.54
12.00
18.181
0.946
T P
1hzc_A
66
100
23
2.52
0.00
17.977
0.876
T P
1g6p_A
66
100
22
2.15
18.18
17.905
0.980
T P
1c9o_A
66
100
23
2.35
13.04
17.810
0.940
T P
2ytx_A
97
100
26
2.84
7.69
17.748
0.885
T P
2ytv_A
79
100
25
2.88
8.00
17.322
0.839
T P
3cam_A
67
100
22
2.38
0.00
17.205
0.888
T P
1hza_A
67
100
20
2.05
0.00
17.191
0.928
T P
2i5l_X
67
100
23
2.55
8.70
16.285
0.867
T P
2k5n_A
74
100
22
2.67
18.18
16.024
0.793
T P
2es2_A
67
100
19
2.80
21.05
13.142
0.654
T P
1hzb_A
66
100
10
2.99
20.00
7.280
0.323
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]