LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_506.5wLII_11364_47
Total number of 3D structures: 71
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2it1_A
362
361
299
1.36
16.72
79.387
20.522
T P
1vci_A
353
361
275
1.89
14.91
67.199
13.787
T P
1v43_A
353
361
272
1.89
14.71
66.380
13.687
T P
2yyz_A
358
361
278
1.96
14.75
65.553
13.505
T P
2awn_B
374
361
265
1.91
14.34
65.026
13.210
T P
1q1b_A
367
361
273
1.98
15.38
62.256
13.138
T P
1oxx_K
352
361
277
2.06
9.75
61.221
12.802
T P
1oxs_C
352
361
277
2.09
10.11
61.218
12.632
T P
2r6g_B
372
361
261
1.83
14.56
60.193
13.526
T P
2d62_A
375
361
262
2.08
13.36
59.962
11.996
T P
1z47_A
345
361
250
1.90
12.80
58.876
12.506
T P
1g29_1
372
361
239
1.92
14.23
56.651
11.806
T P
2onk_A
240
361
198
1.76
13.13
51.031
10.652
T P
3dhw_C
343
361
207
1.92
12.08
50.945
10.233
T P
3d31_A
348
361
208
1.96
13.94
50.890
10.112
T P
2olj_A
242
361
201
1.86
11.44
49.862
10.249
T P
1ji0_A
240
361
199
1.81
15.08
49.606
10.426
T P
1b0u_A
258
361
202
1.97
10.40
48.321
9.735
T P
2yz2_A
266
361
195
1.92
14.87
48.165
9.674
T P
1g6h_A
254
361
186
1.71
11.83
47.311
10.251
T P
1f3o_A
232
361
186
1.70
12.37
46.906
10.336
T P
2pcj_A
223
361
184
1.83
13.04
45.971
9.553
T P
1g9x_A
253
361
188
1.94
11.17
45.121
9.210
T P
3c41_J
242
361
197
1.88
12.69
41.996
9.954
T P
1gaj_A
253
361
183
1.89
10.93
41.113
9.191
T P
1mt0_A
241
361
193
1.98
13.99
40.033
9.260
T P
2ixe_A
251
361
186
1.88
15.05
39.641
9.378
T P
1vpl_A
238
361
185
1.88
16.22
39.543
9.332
T P
2hyd_A
578
361
180
2.00
13.89
38.279
8.582
T P
1jj7_A
251
361
180
1.97
14.44
37.944
8.699
T P
2ixf_A
255
361
182
1.99
13.74
37.658
8.702
T P
2ixg_A
254
361
175
1.88
13.14
37.604
8.835
T P
2ff7_A
243
361
184
1.95
11.96
37.519
8.956
T P
2nq2_C
251
361
176
2.06
12.50
36.613
8.130
T P
3b60_A
572
361
181
2.07
16.57
36.374
8.360
T P
2qi9_C
248
361
178
2.04
15.17
36.071
8.329
T P
1l2t_B
232
361
169
1.98
11.83
35.610
8.138
T P
1yqt_A
515
361
170
2.00
14.71
35.379
8.078
T P
1l7v_C
231
361
178
2.13
14.61
35.182
7.985
T P
3bk7_A
593
361
172
2.06
16.28
34.527
7.965
T P
2zu0_C
247
361
172
2.34
12.21
33.488
7.048
T P
2d3w_A
244
361
165
2.14
15.15
32.901
7.364
T P
2iw3_B
980
361
176
2.38
10.23
32.262
7.110
T P
2vf7_A
815
361
151
2.06
9.93
31.070
6.982
T P
2ix3_A
972
361
172
2.36
8.72
31.051
6.999
T P
2r6f_A
899
361
151
2.13
12.58
30.658
6.763
T P
2pjz_A
261
361
154
2.17
13.64
30.500
6.772
T P
2ix8_A
975
361
160
2.33
11.88
29.327
6.579
T P
1e69_A
263
361
142
2.25
9.86
27.754
6.040
T P
1w1w_B
327
361
144
2.19
9.03
27.724
6.287
T P
3euj_A
437
361
146
2.28
11.64
27.409
6.125
T P
2o5v_A
358
361
140
2.35
11.43
26.056
5.724
T P
1f2u_B
145
361
86
2.06
6.98
19.299
3.988
T P
1xew_Y
160
361
82
2.11
3.66
19.157
3.713
T P
1ii8_B
174
361
84
2.06
7.14
18.952
3.882
T P
1qvr_A
803
361
98
2.48
14.29
17.535
3.806
T P
1xex_B
161
361
88
2.23
5.68
17.372
3.784
T P
1us8_B
140
361
82
2.13
8.54
17.162
3.678
T P
2ax4_A
198
361
76
2.16
17.11
15.729
3.357
T P
1jsq_A
450
361
80
2.42
8.75
14.549
3.177
T P
1ii8_A
195
361
68
2.22
13.24
14.412
2.934
T P
1f2u_A
149
361
65
2.11
13.85
14.244
2.937
T P
1us8_A
129
361
63
2.01
14.29
14.037
2.986
T P
1xew_X
147
361
71
2.39
18.31
13.562
2.856
T P
1z5v_A
412
361
71
2.54
7.04
13.200
2.693
T P
1pf4_A
520
361
64
2.32
14.06
12.878
2.640
T P
3cb2_A
432
361
60
2.63
11.67
11.497
2.201
T P
1qhl_A
203
361
52
2.60
17.31
9.839
1.923
T P
1t9h_A
287
361
55
2.71
3.64
9.640
1.960
T P
2uuu_A
550
361
51
2.78
7.84
9.611
1.770
T P
2i1j_A
481
361
45
2.68
4.44
8.700
1.618
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]