LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_507.5wLII_11364_48
Total number of 3D structures: 26
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3e9u_A
162
160
151
0.89
22.52
93.130
15.192
T P
2dpk_A
124
160
112
1.64
16.07
66.149
6.428
T P
2fwu_A
157
160
112
1.68
16.07
65.408
6.288
T P
2fws_A
139
160
113
2.11
15.04
57.123
5.109
T P
1yio_A
198
160
50
2.50
4.00
21.267
1.921
T P
3clo_A
258
160
48
2.53
10.42
21.208
1.823
T P
1y9q_A
178
160
48
2.39
2.08
21.021
1.927
T P
2h27_A
71
160
42
2.38
7.14
19.333
1.696
T P
1rp3_A
235
160
43
2.69
11.63
17.476
1.539
T P
2pok_A
458
160
40
2.59
2.50
17.235
1.487
T P
1xsv_A
106
160
43
2.95
9.30
17.004
1.412
T P
2o8x_A
61
160
34
2.45
2.94
16.750
1.335
T P
2rnj_A
67
160
32
2.47
6.25
15.838
1.246
T P
3c3w_A
211
160
39
2.85
5.13
15.293
1.323
T P
1s7o_C
108
160
37
2.71
13.51
15.212
1.316
T P
1or7_A
181
160
34
2.70
11.76
14.951
1.213
T P
1a04_A
205
160
32
2.39
15.62
14.631
1.286
T P
2b5a_A
77
160
34
2.66
17.65
14.013
1.232
T P
1y7y_A
69
160
34
2.74
0.00
13.927
1.199
T P
3b7h_A
76
160
31
2.79
9.68
12.812
1.071
T P
3bs3_A
62
160
27
2.36
3.70
12.334
1.099
T P
3c57_A
51
160
30
2.80
13.33
12.197
1.035
T P
2q1z_A
176
160
27
2.67
7.41
11.174
0.975
T P
1x3u_A
79
160
25
2.58
8.00
10.876
0.932
T P
1fse_B
70
160
25
2.93
8.00
10.393
0.824
T P
2z2s_C
172
160
18
2.89
5.56
7.485
0.601
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]