LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_509.5wLII_11364_59
Total number of 3D structures: 140
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1e9r_B
422
444
405
0.61
30.37
90.639
56.995
T P
1gl6_B
420
444
404
0.78
30.45
89.984
45.863
T P
2iut_A
408
444
179
2.11
18.99
28.705
8.097
T P
2iuu_A
408
444
180
2.23
19.44
28.005
7.739
T P
2ius_D
393
444
179
2.24
17.88
27.968
7.665
T P
1pv4_A
408
444
144
2.19
8.33
22.531
6.293
T P
1pvo_A
408
444
146
2.21
8.90
22.527
6.319
T P
2hld_D
470
444
133
2.11
13.53
21.612
6.016
T P
3fks_F
471
444
133
2.21
15.04
21.320
5.759
T P
2eww_A
343
444
121
2.06
14.88
20.553
5.603
T P
3b2q_A
436
444
136
2.23
5.88
20.247
5.827
T P
2ht1_A
324
444
133
2.27
10.53
20.175
5.621
T P
2ewv_A
343
444
120
2.06
14.17
20.134
5.556
T P
1sky_E
470
444
133
2.35
14.29
19.800
5.438
T P
2dpy_B
426
444
127
2.19
10.24
19.543
5.534
T P
1p9r_A
378
444
121
2.08
13.22
19.465
5.542
T P
2gsz_A
343
444
115
2.10
14.78
19.263
5.234
T P
2is6_A
654
444
119
2.29
11.76
19.194
4.989
T P
1tf7_A
484
444
115
2.10
14.78
19.167
5.219
T P
2gbl_A
506
444
114
2.05
13.16
18.979
5.311
T P
2gza_C
336
444
123
2.28
14.63
18.978
5.163
T P
2eyu_A
247
444
118
2.16
16.10
18.779
5.219
T P
1sxj_C
322
444
108
2.10
17.59
18.399
4.904
T P
1g6o_A
323
444
116
2.26
14.66
18.358
4.918
T P
2gbl_C
488
444
111
2.12
16.22
18.320
5.009
T P
2r6f_A
899
444
116
2.38
15.52
17.919
4.685
T P
1l2t_B
232
444
118
2.34
10.17
17.886
4.838
T P
1uaa_A
636
444
119
2.61
13.45
17.753
4.389
T P
1sxj_B
316
444
110
2.24
15.45
17.539
4.705
T P
1d2m_A
552
444
115
2.50
14.78
17.435
4.427
T P
2ix8_A
975
444
116
2.42
11.21
17.363
4.602
T P
1vpl_A
238
444
112
2.33
12.50
17.181
4.616
T P
1in8_A
298
444
101
2.04
22.77
17.143
4.725
T P
2qby_A
366
444
111
2.31
18.02
17.140
4.602
T P
1sxj_E
317
444
103
2.11
16.50
17.101
4.659
T P
2fdc_B
585
444
109
2.16
14.68
17.078
4.812
T P
2pjz_A
261
444
124
2.66
10.48
17.065
4.497
T P
2yz2_A
266
444
113
2.29
14.16
17.045
4.721
T P
1in7_A
298
444
101
2.01
22.77
16.995
4.796
T P
2pt7_A
323
444
112
2.34
16.96
16.924
4.599
T P
1r0z_C
277
444
113
2.32
14.16
16.905
4.672
T P
1c4o_A
504
444
113
2.49
13.27
16.871
4.364
T P
3c41_J
242
444
114
2.41
14.04
16.856
4.543
T P
2pcj_A
223
444
110
2.26
15.45
16.831
4.662
T P
2awn_B
374
444
108
2.28
15.74
16.802
4.544
T P
1j7k_A
299
444
100
2.03
23.00
16.798
4.690
T P
3b60_A
572
444
112
2.48
12.50
16.766
4.349
T P
2olj_A
242
444
110
2.28
10.91
16.728
4.621
T P
2d7d_A
621
444
109
2.38
13.76
16.701
4.398
T P
2pl3_A
232
444
109
2.42
14.68
16.615
4.319
T P
2gk6_A
602
444
118
2.53
12.71
16.592
4.480
T P
1b0u_A
258
444
108
2.39
12.04
16.546
4.345
T P
1mt0_A
241
444
111
2.32
12.61
16.519
4.588
T P
1g9x_A
253
444
109
2.32
11.01
16.474
4.504
T P
2chq_A
313
444
107
2.44
14.02
16.443
4.221
T P
1in4_A
298
444
99
2.12
23.23
16.416
4.468
T P
2va8_B
695
444
107
2.38
17.76
16.364
4.322
T P
2pmk_A
243
444
108
2.37
9.26
16.327
4.365
T P
2it1_A
362
444
103
2.37
10.68
16.261
4.175
T P
2ff7_A
243
444
107
2.34
10.28
16.214
4.382
T P
2ibm_A
780
444
114
2.62
12.28
16.125
4.197
T P
2ffb_A
243
444
102
2.27
9.80
16.116
4.295
T P
1g6h_A
254
444
103
2.25
11.65
16.105
4.379
T P
1oxs_C
352
444
110
2.47
12.73
16.095
4.285
T P
1oxx_K
352
444
109
2.46
12.84
16.083
4.255
T P
1r6b_X
704
444
98
2.17
13.27
16.080
4.320
T P
1wp9_A
479
444
108
2.42
11.11
16.033
4.289
T P
3dkp_A
240
444
110
2.58
19.09
16.008
4.099
T P
2db3_A
420
444
105
2.27
12.38
15.993
4.436
T P
1v43_A
353
444
101
2.23
13.86
15.987
4.335
T P
3b85_A
187
444
109
2.49
17.43
15.898
4.208
T P
2c9o_A
398
444
107
2.50
10.28
15.854
4.112
T P
1vci_A
353
444
100
2.14
13.00
15.845
4.472
T P
1qvr_A
803
444
102
2.22
7.84
15.836
4.390
T P
1t5l_A
595
444
101
2.17
14.85
15.780
4.454
T P
2yyz_A
358
444
100
2.46
19.00
15.711
3.905
T P
1fnn_A
379
444
98
2.26
15.31
15.651
4.150
T P
2chg_A
223
444
102
2.34
16.67
15.577
4.181
T P
1g29_1
372
444
101
2.28
9.90
15.558
4.246
T P
1d9z_A
590
444
101
2.22
15.84
15.518
4.345
T P
2z0m_A
331
444
109
2.48
13.76
15.510
4.221
T P
1ixs_B
315
444
97
2.21
23.71
15.435
4.195
T P
1iqp_A
326
444
95
2.29
16.84
15.433
3.969
T P
1gaj_A
253
444
105
2.39
13.33
15.429
4.214
T P
1um8_A
327
444
94
2.13
8.51
15.217
4.206
T P
2iw3_B
980
444
99
2.45
9.09
15.145
3.877
T P
2ix3_A
972
444
104
2.55
10.58
15.065
3.918
T P
2i4i_A
408
444
101
2.44
14.85
15.063
3.973
T P
3eiq_D
371
444
99
2.45
12.12
14.845
3.880
T P
2j37_W
479
444
94
2.33
11.70
14.845
3.867
T P
1g20_H
262
444
98
2.51
7.14
14.781
3.761
T P
2px0_A
258
444
92
2.39
10.87
14.399
3.695
T P
1wrb_A
232
444
95
2.38
5.26
14.092
3.833
T P
1goj_A
354
444
94
2.54
13.83
14.082
3.566
T P
1fts_A
295
444
89
2.51
8.99
13.965
3.416
T P
3d31_A
348
444
95
2.56
11.58
13.905
3.566
T P
1e69_A
263
444
101
2.70
11.88
13.879
3.613
T P
1d9x_A
590
444
94
2.57
10.64
13.797
3.521
T P
1m6n_A
802
444
97
2.60
11.34
13.747
3.587
T P
1de0_A
289
444
93
2.76
7.53
13.584
3.246
T P
1tf5_A
775
444
94
2.67
8.51
13.543
3.399
T P
2qy9_A
300
444
92
2.72
10.87
13.535
3.258
T P
2afh_E
289
444
92
2.57
10.87
13.508
3.446
T P
1mys_A
800
444
89
2.76
14.61
13.485
3.113
T P
2mys_A
800
444
89
2.76
13.48
13.485
3.113
T P
2p67_A
302
444
86
2.19
13.95
13.348
3.759
T P
2hf9_A
211
444
79
2.31
11.39
12.761
3.273
T P
2otg_A
800
444
79
2.55
12.66
12.664
2.976
T P
2hf8_A
211
444
76
2.35
11.84
12.435
3.099
T P
1cke_A
212
444
80
2.46
11.25
12.407
3.124
T P
1yrb_B
260
444
86
2.85
12.79
12.372
2.919
T P
1rz3_A
184
444
80
2.44
8.75
12.364
3.156
T P
2owm_A
328
444
87
2.62
11.49
12.356
3.197
T P
2bdt_A
172
444
78
2.37
14.10
12.259
3.153
T P
2fem_A
212
444
79
2.44
12.66
12.116
3.114
T P
1xdb_A
289
444
82
2.75
7.32
12.021
2.877
T P
1ozq_A
372
444
85
2.69
10.59
11.944
3.041
T P
1rw4_A
271
444
81
2.67
7.41
11.928
2.922
T P
2ax4_A
198
444
71
2.12
16.90
11.883
3.204
T P
1kag_A
158
444
74
2.12
13.51
11.838
3.335
T P
3pgk_A
415
444
78
2.63
8.97
11.829
2.855
T P
2v3c_C
403
444
81
2.88
6.17
11.426
2.722
T P
1tpz_A
395
444
75
2.53
6.67
11.221
2.850
T P
2o2k_B
333
444
69
2.58
5.80
11.105
2.575
T P
1xzp_A
456
444
72
2.68
1.39
10.659
2.591
T P
2qpt_A
476
444
66
2.05
15.15
10.588
3.074
T P
3dm5_A
416
444
72
2.78
5.56
10.520
2.497
T P
1tq4_A
396
444
70
2.66
15.71
10.368
2.538
T P
1tqd_A
385
444
65
2.80
3.08
9.300
2.245
T P
1wf3_A
296
444
58
2.61
1.72
8.700
2.139
T P
1kdo_A
223
444
55
2.52
5.45
8.372
2.097
T P
1tq6_A
402
444
57
2.71
1.75
8.306
2.026
T P
1ega_B
293
444
57
2.87
3.51
8.175
1.921
T P
2zej_B
162
444
49
2.80
4.08
7.223
1.691
T P
2ve8_D
68
444
42
2.42
4.76
6.743
1.665
T P
2j5o_A
72
444
40
2.34
5.00
6.718
1.638
T P
2j5p_A
70
444
42
2.36
2.38
6.705
1.708
T P
1us8_A
129
444
42
2.60
2.38
6.137
1.558
T P
1ii8_A
195
444
42
2.64
9.52
6.048
1.530
T P
1f2u_A
149
444
36
2.79
0.00
5.462
1.247
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]