LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_510.5wLII_11364_61.FR_1_700
Total number of 3D structures: 120
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3e1s_A
517
413
378
0.96
17.99
88.843
35.643
T P
1w36_D
538
413
249
2.31
18.07
44.688
10.348
T P
2is6_A
654
413
189
2.21
15.87
30.965
8.170
T P
2gk6_A
602
413
182
2.47
14.29
30.453
7.093
T P
2pjr_F
544
413
182
2.49
18.13
28.899
7.031
T P
1pjr_A
623
413
155
2.25
20.00
27.118
6.602
T P
3g0h_A
408
413
154
2.32
14.29
25.695
6.374
T P
2eyq_A
1146
413
138
2.18
13.77
25.662
6.044
T P
1c4o_A
504
413
147
2.37
17.01
25.211
5.963
T P
1uaa_A
636
413
156
2.55
16.67
25.028
5.893
T P
1d2m_A
552
413
148
2.33
17.57
24.973
6.078
T P
3b85_A
187
413
135
2.11
22.22
24.876
6.097
T P
3fht_A
392
413
147
2.30
12.93
24.477
6.113
T P
2va8_B
695
413
137
2.21
15.33
24.317
5.935
T P
3ews_A
416
413
123
2.09
17.07
23.453
5.610
T P
2fwr_A
434
413
117
2.16
12.82
22.771
5.180
T P
1gm5_A
729
413
151
2.68
10.60
22.557
5.425
T P
1oyy_A
512
413
135
2.41
9.63
21.845
5.376
T P
1s2m_A
377
413
121
2.27
13.22
21.182
5.105
T P
2vso_A
366
413
121
2.32
13.22
20.803
4.991
T P
2v8o_A
429
413
116
2.15
14.66
20.781
5.165
T P
1oyw_A
516
413
126
2.28
7.14
20.564
5.294
T P
1l8q_A
321
413
121
2.33
17.36
20.442
4.980
T P
3b6e_A
182
413
103
1.87
20.39
20.427
5.223
T P
2hcb_D
320
413
118
2.20
17.80
20.233
5.121
T P
2qby_A
366
413
120
2.33
15.00
19.117
4.945
T P
1cu1_A
645
413
121
2.40
13.22
19.081
4.838
T P
1sxj_C
322
413
109
2.29
12.84
18.409
4.555
T P
1sxj_D
328
413
113
2.44
11.50
18.133
4.445
T P
1a1v_A
432
413
112
2.39
16.96
18.004
4.496
T P
2eyu_A
247
413
106
2.23
12.26
17.978
4.553
T P
2ewv_A
343
413
108
2.27
12.04
17.905
4.566
T P
2eww_A
343
413
106
2.19
11.32
17.877
4.629
T P
1sxj_A
441
413
106
2.23
13.21
17.704
4.559
T P
2f55_A
432
413
105
2.26
16.19
17.610
4.447
T P
1qvr_A
803
413
113
2.41
14.16
17.567
4.504
T P
1xxi_C
366
413
106
2.23
12.26
17.479
4.550
T P
1w36_B
1158
413
105
2.54
13.33
16.973
3.974
T P
1qhh_B
261
413
99
2.60
17.17
16.784
3.671
T P
1ojl_D
297
413
105
2.40
13.33
16.625
4.201
T P
1ny5_B
385
413
103
2.38
11.65
16.621
4.156
T P
1jr3_A
366
413
98
2.10
11.22
16.618
4.455
T P
1njg_A
240
413
99
2.20
11.11
16.572
4.308
T P
1s9h_A
268
413
99
2.42
18.18
16.307
3.926
T P
2hyd_A
578
413
98
2.38
15.31
16.227
3.955
T P
3dzd_A
368
413
99
2.33
15.15
16.028
4.067
T P
1u0j_A
261
413
97
2.34
17.53
15.935
3.980
T P
2gxa_E
274
413
92
2.23
13.04
15.861
3.943
T P
1qhh_A
164
413
80
2.18
22.50
15.678
3.514
T P
2v9p_D
274
413
93
2.20
16.13
15.578
4.042
T P
1hei_A
443
413
108
2.73
7.41
15.406
3.812
T P
1ye8_A
172
413
86
2.19
25.58
14.768
3.750
T P
2ffh_A
407
413
90
2.58
13.33
14.664
3.356
T P
2ncd_A
358
413
84
2.21
8.33
14.378
3.632
T P
3e70_C
307
413
87
2.61
18.39
14.308
3.212
T P
1n6m_A
362
413
82
2.20
8.54
14.238
3.566
T P
1fuu_B
380
413
91
2.81
7.69
14.024
3.129
T P
1ihu_A
540
413
88
2.72
10.23
13.972
3.118
T P
1g3q_A
237
413
85
2.60
17.65
13.798
3.144
T P
3bh1_D
487
413
94
2.81
14.89
13.749
3.232
T P
2qeq_A
415
413
90
2.81
5.56
13.698
3.094
T P
3dm5_A
416
413
75
2.39
18.67
13.635
3.009
T P
1jpn_A
296
413
80
2.61
21.25
13.413
2.948
T P
1rj9_B
282
413
77
2.38
16.88
13.287
3.103
T P
2j45_A
297
413
81
2.75
18.52
13.195
2.845
T P
1w9l_A
726
413
79
2.46
12.66
13.126
3.085
T P
3dm9_B
305
413
79
2.82
18.99
13.055
2.706
T P
1cz7_D
365
413
70
2.16
10.00
12.800
3.093
T P
2c03_B
297
413
80
2.73
15.00
12.530
2.829
T P
2zzy_A
186
413
71
2.06
18.31
12.349
3.283
T P
2zzz_A
186
413
72
2.35
20.83
12.321
2.944
T P
2px0_A
258
413
70
2.61
18.57
12.272
2.580
T P
1xzp_A
456
413
75
2.62
13.33
12.043
2.757
T P
1np6_B
169
413
67
2.51
19.40
11.760
2.569
T P
2ng1_A
293
413
77
2.66
14.29
11.725
2.789
T P
2j3e_A
249
413
70
2.43
8.57
11.550
2.767
T P
3a00_A
153
413
67
2.15
20.90
11.518
2.982
T P
3def_A
244
413
69
2.45
5.80
11.452
2.708
T P
821p_A
166
413
68
2.49
19.12
11.298
2.626
T P
2o52_A
167
413
66
2.37
9.09
11.208
2.676
T P
3bb3_A
242
413
64
2.35
7.81
11.158
2.616
T P
1jah_A
166
413
66
2.40
18.18
11.144
2.636
T P
1ump_A
619
413
67
2.59
5.97
11.011
2.486
T P
2owo_A
586
413
68
2.51
10.29
10.796
2.610
T P
2j28_9
430
413
68
2.87
10.29
10.740
2.286
T P
1ls1_A
289
413
66
2.81
7.58
10.594
2.266
T P
1w9k_A
719
413
61
2.47
11.48
10.421
2.378
T P
2j7p_A
292
413
67
2.69
10.45
10.386
2.403
T P
1dgk_N
898
413
69
2.73
8.70
10.313
2.435
T P
1d1a_A
745
413
61
2.51
4.92
10.254
2.337
T P
2v3c_C
403
413
70
2.77
7.14
10.210
2.442
T P
1w9i_A
702
413
58
2.57
17.24
10.201
2.175
T P
1hkb_A
899
413
62
2.79
8.06
10.081
2.146
T P
1w9j_A
728
413
58
2.43
15.52
9.977
2.290
T P
2bgw_A
219
413
54
2.61
3.70
9.896
1.993
T P
1ffh_A
287
413
63
2.76
9.52
9.792
2.205
T P
2aka_A
764
413
57
2.67
0.00
9.749
2.054
T P
1fmv_A
743
413
60
2.66
5.00
9.599
2.175
T P
1bg3_A
902
413
64
2.70
9.38
9.566
2.286
T P
8ohm_A
435
413
63
2.87
3.17
9.272
2.121
T P
1lvk_A
743
413
58
2.85
12.07
9.194
1.969
T P
2jj9_A
692
413
55
2.66
10.91
9.143
1.989
T P
2bhn_A
211
413
54
2.48
9.26
9.110
2.095
T P
1jwy_A
753
413
52
2.47
13.46
8.998
2.024
T P
1qha_A
903
413
53
2.58
5.66
8.991
1.974
T P
1v9p_A
584
413
56
2.69
7.14
8.906
2.004
T P
1dgt_B
660
413
56
2.79
7.14
8.833
1.941
T P
1vom_A
730
413
53
2.73
9.43
8.491
1.871
T P
1ega_B
293
413
54
2.79
7.41
8.340
1.869
T P
1cza_N
898
413
52
2.78
7.69
8.052
1.806
T P
1p4d_B
276
413
54
2.94
7.41
7.998
1.774
T P
3ekj_A
301
413
45
2.67
11.11
7.877
1.623
T P
1yv3_A
703
413
49
2.91
4.08
7.841
1.627
T P
2dg8_B
176
413
47
2.83
17.02
7.426
1.603
T P
2a0i_A
293
413
44
2.55
6.82
7.114
1.659
T P
2cdm_A
280
413
41
2.63
12.20
7.029
1.500
T P
1omh_A
282
413
44
2.88
11.36
6.864
1.478
T P
2iyk_A
155
413
40
2.73
7.50
6.841
1.415
T P
1osb_A
287
413
36
2.73
5.56
6.381
1.271
T P
2q7t_A
267
413
37
2.55
5.41
6.142
1.397
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]