LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_512.5wLII_11386_5
Total number of 3D structures: 41
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
222 |
204 |
1.02 |
20.59 |
89.499 |
18.288 |
T P |
2vq2_A |
220 |
222 |
173 |
1.98 |
12.14 |
67.007 |
8.318 |
T P |
2pl2_A |
194 |
222 |
170 |
2.03 |
15.88 |
65.612 |
7.997 |
T P |
2fi7_A |
223 |
222 |
170 |
2.03 |
17.06 |
64.509 |
7.986 |
T P |
2ho1_A |
222 |
222 |
169 |
2.07 |
15.98 |
62.693 |
7.783 |
T P |
1xnf_B |
262 |
222 |
164 |
1.98 |
13.41 |
61.857 |
7.874 |
T P |
2gw1_A |
487 |
222 |
165 |
1.98 |
16.36 |
61.174 |
7.937 |
T P |
2vsy_A |
547 |
222 |
156 |
2.06 |
10.90 |
54.790 |
7.225 |
T P |
2fo7_A |
136 |
222 |
128 |
1.65 |
23.44 |
53.167 |
7.314 |
T P |
1hh8_A |
192 |
222 |
134 |
1.97 |
9.70 |
53.053 |
6.487 |
T P |
1e96_B |
185 |
222 |
130 |
2.01 |
10.77 |
51.688 |
6.166 |
T P |
1wm5_A |
205 |
222 |
130 |
1.99 |
10.00 |
51.577 |
6.211 |
T P |
2c2l_A |
281 |
222 |
122 |
1.68 |
13.11 |
51.409 |
6.855 |
T P |
2vsn_A |
534 |
222 |
139 |
1.95 |
10.79 |
50.295 |
6.777 |
T P |
2c0l_A |
292 |
222 |
137 |
2.10 |
11.68 |
49.990 |
6.214 |
T P |
2vyi_A |
128 |
222 |
116 |
1.49 |
17.24 |
49.644 |
7.302 |
T P |
2dba_A |
148 |
222 |
119 |
1.58 |
13.45 |
49.461 |
7.085 |
T P |
1a17_A |
159 |
222 |
116 |
1.50 |
13.79 |
49.285 |
7.244 |
T P |
2bug_A |
131 |
222 |
119 |
1.64 |
13.45 |
49.208 |
6.825 |
T P |
1ihg_A |
364 |
222 |
119 |
1.75 |
11.76 |
49.022 |
6.447 |
T P |
1qz2_A |
285 |
222 |
118 |
1.74 |
14.41 |
48.850 |
6.396 |
T P |
2c0m_C |
302 |
222 |
143 |
2.27 |
11.89 |
48.732 |
6.030 |
T P |
1elr_A |
128 |
222 |
116 |
1.55 |
15.52 |
48.694 |
7.011 |
T P |
1elw_A |
117 |
222 |
116 |
1.50 |
12.93 |
48.455 |
7.251 |
T P |
2j9q_A |
300 |
222 |
148 |
2.33 |
12.84 |
48.295 |
6.098 |
T P |
1p5q_A |
283 |
222 |
115 |
1.64 |
14.78 |
48.295 |
6.618 |
T P |
3cv0_A |
300 |
222 |
141 |
2.40 |
11.35 |
48.237 |
5.651 |
T P |
1wao_1 |
471 |
222 |
114 |
1.74 |
14.91 |
47.706 |
6.181 |
T P |
3cvq_A |
289 |
222 |
140 |
2.44 |
10.71 |
47.173 |
5.520 |
T P |
1kt1_A |
374 |
222 |
113 |
1.67 |
15.93 |
47.011 |
6.389 |
T P |
1fch_A |
302 |
222 |
132 |
2.17 |
12.12 |
46.872 |
5.810 |
T P |
1na0_A |
119 |
222 |
113 |
1.64 |
23.01 |
46.681 |
6.509 |
T P |
1kt0_A |
357 |
222 |
110 |
1.71 |
16.36 |
45.873 |
6.093 |
T P |
2fbn_A |
153 |
222 |
116 |
1.98 |
13.79 |
45.634 |
5.566 |
T P |
3edt_B |
258 |
222 |
126 |
2.14 |
16.67 |
45.126 |
5.622 |
T P |
2if4_A |
258 |
222 |
120 |
1.98 |
10.83 |
44.306 |
5.762 |
T P |
2q7f_A |
194 |
222 |
128 |
2.33 |
14.84 |
44.129 |
5.277 |
T P |
3ceq_B |
269 |
222 |
122 |
2.25 |
13.11 |
41.271 |
5.186 |
T P |
1ouv_A |
265 |
222 |
119 |
2.30 |
8.40 |
39.142 |
4.958 |
T P |
1na3_A |
86 |
222 |
85 |
1.36 |
21.18 |
36.530 |
5.831 |
T P |
2avp_A |
68 |
222 |
68 |
0.80 |
22.06 |
30.180 |
7.574 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]