LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_516.5wLII_11389_17
Total number of 3D structures: 106
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2hyx_A
333
316
289
0.70
33.56
90.712
36.245
T P
3eyt_C
157
316
139
1.54
24.46
40.728
8.450
T P
3c71_A
140
316
134
1.75
21.64
39.239
7.260
T P
2ywi_A
190
316
133
1.67
15.04
39.202
7.510
T P
2f9s_A
138
316
129
1.43
21.71
38.971
8.413
T P
2h19_A
138
316
131
1.57
21.37
38.892
7.839
T P
2h1a_B
139
316
131
1.56
21.37
38.859
7.895
T P
1st9_A
137
316
129
1.45
21.71
38.796
8.344
T P
3c73_B
138
316
131
1.60
22.14
38.760
7.723
T P
2b5x_A
148
316
136
1.82
26.47
38.752
7.100
T P
2h1b_A
138
316
130
1.59
21.54
38.730
7.685
T P
2h1g_B
137
316
131
1.60
20.61
38.515
7.685
T P
1kng_A
144
316
130
1.69
24.62
37.571
7.259
T P
1zzo_A
134
316
128
1.70
14.06
37.299
7.124
T P
3fkf_A
141
316
128
1.70
19.53
36.912
7.105
T P
1lu4_A
134
316
123
1.75
16.26
36.229
6.653
T P
1xcc_A
219
316
130
2.00
10.00
35.621
6.188
T P
2b1k_A
149
316
127
1.90
16.54
35.599
6.352
T P
2g0f_A
149
316
126
1.86
16.67
35.488
6.412
T P
2p5q_A
161
316
120
1.79
18.33
35.409
6.351
T P
1xxu_A
153
316
129
1.90
16.28
35.402
6.456
T P
2nvl_A
242
316
131
2.00
12.21
35.236
6.240
T P
2e2g_B
239
316
132
2.05
12.88
34.894
6.153
T P
2cv4_D
242
316
131
2.04
12.21
34.894
6.113
T P
1vgs_D
242
316
131
2.03
12.98
34.894
6.147
T P
1qmv_A
196
316
128
1.97
13.28
34.824
6.193
T P
1x0r_A
244
316
132
2.04
12.88
34.563
6.155
T P
2zct_D
238
316
131
2.03
12.21
34.416
6.146
T P
2ywn_A
150
316
120
1.70
18.33
34.343
6.682
T P
1uul_A
194
316
128
2.04
10.16
34.342
5.986
T P
1prx_A
220
316
128
1.96
10.94
34.087
6.224
T P
1jfu_B
177
316
128
2.13
17.97
33.659
5.737
T P
2cx4_A
161
316
127
1.93
13.39
33.037
6.255
T P
2v2g_A
220
316
127
1.99
11.02
32.911
6.086
T P
2pn8_A
191
316
126
1.98
15.08
32.858
6.054
T P
2z9s_A
197
316
126
1.97
15.08
32.779
6.078
T P
1z5y_E
136
316
115
1.96
18.26
32.635
5.584
T P
1yf0_A
167
316
124
2.02
19.35
32.433
5.845
T P
1yf1_A
166
316
123
2.01
19.51
32.401
5.839
T P
3emp_B
162
316
123
2.00
18.70
32.195
5.868
T P
3erw_A
134
316
115
1.93
19.13
32.001
5.669
T P
1n8j_A
186
316
125
2.00
17.60
31.932
5.948
T P
1yep_A
168
316
124
2.03
19.35
31.446
5.829
T P
2i81_A
193
316
127
2.09
14.17
31.402
5.793
T P
1yex_A
167
316
122
2.09
18.85
31.039
5.572
T P
1zye_A
162
316
126
2.03
11.11
30.905
5.907
T P
2h01_A
174
316
122
2.06
17.21
30.141
5.660
T P
2feg_A
169
316
122
2.09
16.39
30.071
5.582
T P
1e2y_G
173
316
124
2.01
12.10
29.637
5.869
T P
1we0_A
166
316
117
1.97
15.38
29.490
5.666
T P
1zof_B
175
316
119
2.10
14.29
29.439
5.397
T P
2rii_B
185
316
123
2.10
16.26
29.416
5.599
T P
2c0d_B
175
316
123
2.16
10.57
29.263
5.442
T P
1qq2_A
173
316
119
1.99
17.65
29.234
5.691
T P
1xwa_A
111
316
95
1.55
16.84
28.159
5.749
T P
1xwb_A
106
316
96
1.53
16.67
28.006
5.898
T P
1o73_A
144
316
111
2.17
13.51
27.974
4.889
T P
2b1l_B
129
316
108
2.13
18.52
27.947
4.845
T P
2bmx_B
178
316
121
2.25
16.53
27.912
5.157
T P
2yzu_A
104
316
94
1.62
23.40
27.694
5.470
T P
2cvk_A
105
316
93
1.59
23.66
27.694
5.512
T P
2i4a_A
107
316
93
1.80
20.43
27.225
4.887
T P
2fch_D
107
316
95
1.87
20.00
27.147
4.813
T P
2h74_A
108
316
94
1.90
19.15
27.004
4.696
T P
1t00_A
112
316
96
1.97
19.79
26.955
4.628
T P
1nw2_A
105
316
92
1.77
25.00
26.892
4.929
T P
2h72_A
107
316
92
1.81
20.65
26.850
4.828
T P
2trx_A
108
316
92
1.85
19.57
26.787
4.726
T P
2eio_A
107
316
95
1.99
18.95
26.738
4.556
T P
2h71_A
107
316
93
1.91
20.43
26.711
4.634
T P
2h76_A
108
316
92
1.86
21.74
26.663
4.693
T P
3dyr_A
111
316
93
1.89
19.35
26.660
4.670
T P
2h6z_A
108
316
93
1.88
18.28
26.654
4.694
T P
2eir_A
107
316
93
1.90
19.35
26.649
4.659
T P
2h73_A
108
316
94
1.95
19.15
26.648
4.593
T P
2o7k_A
103
316
92
1.83
18.48
26.632
4.778
T P
3dxb_D
216
316
92
1.85
19.57
26.601
4.710
T P
2h6y_A
107
316
93
1.94
19.35
26.581
4.562
T P
2fd3_A
108
316
92
1.87
19.57
26.504
4.680
T P
1zzy_A
106
316
93
1.88
19.35
26.498
4.691
T P
2tir_A
108
316
93
1.93
19.35
26.472
4.586
T P
1nsw_A
105
316
92
1.86
23.91
26.395
4.704
T P
1zcp_A
106
316
93
1.96
18.28
26.382
4.521
T P
2h70_A
107
316
94
1.98
19.15
26.360
4.516
T P
1tho_A
109
316
92
1.88
19.57
26.350
4.653
T P
2o8v_B
108
316
94
1.98
19.15
26.336
4.527
T P
1txx_A
108
316
91
1.86
20.88
26.141
4.641
T P
2i1u_A
108
316
87
1.61
24.14
26.110
5.101
T P
2h30_A
151
316
114
2.17
19.30
26.090
5.021
T P
2eiq_A
107
316
90
1.81
20.00
26.080
4.718
T P
2gzy_A
104
316
92
1.96
20.65
25.802
4.458
T P
1quw_A
105
316
91
1.97
24.18
25.721
4.386
T P
2fy6_A
143
316
115
2.25
20.00
25.557
4.895
T P
2h75_B
108
316
91
1.98
18.68
25.539
4.381
T P
1srx_A
108
316
91
1.95
17.58
25.459
4.430
T P
1keb_A
108
316
95
2.09
17.89
25.458
4.343
T P
1f6m_C
108
316
91
2.06
17.58
25.175
4.220
T P
2jzr_A
144
316
111
2.28
19.82
24.626
4.665
T P
3f8u_A
469
316
98
2.19
14.29
23.970
4.277
T P
1rqm_A
105
316
90
2.07
25.56
23.743
4.154
T P
1oaz_A
115
316
84
1.97
14.29
23.364
4.063
T P
1gl8_A
104
316
85
1.91
18.82
22.922
4.228
T P
2alb_A
113
316
82
2.01
13.41
22.612
3.879
T P
1mek_A
120
316
84
1.96
13.10
21.975
4.083
T P
2i9h_A
103
316
85
2.11
21.18
20.374
3.839
T P
1wmj_A
122
316
86
2.13
15.12
20.099
3.858
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]