LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_52.5wLII_10954_2
Total number of 3D structures: 79
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1zyl_A
325
343
294
0.95
18.03
83.395
27.942
T P
2ppq_A
310
343
219
2.21
12.79
44.222
9.468
T P
2qg7_E
369
343
216
2.27
11.11
41.381
9.095
T P
3c5i_D
355
343
219
2.35
7.76
41.284
8.949
T P
3feg_A
336
343
212
2.32
10.85
41.033
8.749
T P
2ig7_B
342
343
218
2.35
11.47
40.631
8.916
T P
2cko_B
346
343
209
2.27
11.00
40.295
8.803
T P
3f2s_A
354
343
210
2.35
10.95
40.268
8.569
T P
3fi8_A
339
343
209
2.30
8.61
39.970
8.700
T P
2i7q_A
344
343
206
2.38
11.17
38.941
8.294
T P
3dxq_A
294
343
197
2.39
14.72
36.669
7.917
T P
3dxp_A
329
343
201
2.44
9.45
36.655
7.907
T P
2q83_A
332
343
184
2.36
10.33
36.537
7.475
T P
3d1u_A
288
343
201
2.47
13.93
36.226
7.830
T P
1nw1_A
365
343
193
2.37
10.88
36.010
7.815
T P
3csv_A
322
343
182
2.30
8.79
35.442
7.574
T P
2pyw_A
417
343
187
2.52
13.37
34.098
7.134
T P
2bkk_C
262
343
185
2.39
10.27
33.589
7.433
T P
1nd4_A
255
343
171
2.45
8.19
32.997
6.694
T P
2pul_A
381
343
175
2.49
10.29
32.329
6.751
T P
1tqp_A
269
343
136
2.04
16.91
32.086
6.344
T P
1l8t_A
263
343
171
2.54
11.70
30.652
6.488
T P
1zar_A
267
343
132
2.09
15.15
30.628
6.025
T P
1j7l_A
263
343
171
2.52
11.70
30.390
6.522
T P
3en9_A
519
343
140
2.13
15.00
29.341
6.282
T P
2vwb_A
519
343
141
2.21
14.18
29.073
6.111
T P
2jed_A
326
343
138
2.39
13.04
25.562
5.543
T P
3brb_B
271
343
125
2.23
9.60
25.517
5.370
T P
2pzi_A
654
343
134
2.32
11.94
25.364
5.529
T P
3e3p_A
337
343
118
2.24
13.56
25.103
5.047
T P
2j51_A
288
343
124
2.33
13.71
25.056
5.112
T P
2etr_A
400
343
124
2.34
8.87
24.790
5.088
T P
3g2f_A
305
343
126
2.41
10.32
24.709
5.028
T P
1phk_A
277
343
132
2.41
5.30
24.529
5.256
T P
1ql6_A
281
343
132
2.40
5.30
24.521
5.278
T P
1zrz_A
312
343
131
2.41
12.21
24.454
5.227
T P
2v55_C
396
343
127
2.36
8.66
24.416
5.173
T P
2z7r_A
265
343
126
2.35
12.70
24.164
5.141
T P
2f2u_A
386
343
124
2.32
8.87
24.005
5.117
T P
3daj_A
245
343
130
2.58
5.38
23.966
4.855
T P
2jfl_A
288
343
126
2.43
7.94
23.540
4.974
T P
2pml_X
340
343
128
2.44
10.16
23.434
5.034
T P
2w5a_A
267
343
122
2.37
5.74
23.432
4.937
T P
2ja0_A
286
343
125
2.46
8.00
23.378
4.875
T P
2h34_A
243
343
119
2.29
9.24
23.368
4.982
T P
2qo9_A
277
343
115
2.44
12.17
23.254
4.523
T P
2phk_A
277
343
120
2.39
5.00
23.088
4.815
T P
2qob_A
281
343
109
2.41
10.09
22.750
4.347
T P
3f69_B
283
343
122
2.43
8.20
22.690
4.824
T P
1k2p_A
258
343
115
2.41
8.70
22.101
4.588
T P
2p2i_A
289
343
121
2.54
10.74
21.829
4.587
T P
2buj_A
291
343
111
2.45
6.31
21.601
4.361
T P
2vrx_B
275
343
116
2.62
11.21
21.554
4.269
T P
2oh4_A
299
343
113
2.53
7.08
21.291
4.292
T P
2jav_A
253
343
112
2.52
7.14
21.224
4.270
T P
1fot_A
300
343
111
2.44
9.91
21.044
4.365
T P
1vr2_A
275
343
118
2.57
6.78
21.018
4.417
T P
3c7q_A
291
343
107
2.50
9.35
20.582
4.122
T P
1muo_A
251
343
107
2.35
6.54
20.540
4.376
T P
3d14_A
262
343
109
2.48
3.67
20.515
4.230
T P
2qoo_A
273
343
112
2.58
9.82
20.290
4.181
T P
3efw_B
242
343
103
2.30
9.71
20.028
4.291
T P
2qoq_A
285
343
107
2.61
6.54
19.447
3.953
T P
2qok_A
281
343
108
2.66
7.41
19.392
3.906
T P
1ywn_A
281
343
102
2.63
5.88
19.265
3.741
T P
3be2_A
290
343
106
2.63
7.55
19.104
3.886
T P
3cjf_A
281
343
100
2.52
7.00
18.782
3.813
T P
3cjg_A
282
343
101
2.62
6.93
18.741
3.708
T P
1y6b_A
266
343
95
2.57
3.16
17.918
3.555
T P
1qqc_A
740
343
69
2.76
8.70
13.465
2.410
T P
1r6b_X
704
343
71
2.87
2.82
13.205
2.387
T P
2dhr_A
458
343
61
2.39
3.28
12.880
2.451
T P
1g5a_A
628
343
57
2.53
5.26
11.300
2.167
T P
1ixz_A
238
343
57
2.57
12.28
10.570
2.137
T P
1jmx_B
339
343
51
2.75
11.76
10.158
1.789
T P
1iy2_A
245
343
47
2.69
8.51
9.688
1.687
T P
1via_A
161
343
43
2.38
2.33
9.544
1.733
T P
2iyv_A
179
343
42
2.56
9.52
8.757
1.582
T P
2g1k_A
168
343
42
2.84
9.52
7.815
1.428
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]