LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_520.5wLII_11389_24
Total number of 3D structures: 42
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
168 |
166 |
0.58 |
21.08 |
98.595 |
24.265 |
T P |
2fi7_A |
223 |
168 |
159 |
1.73 |
13.84 |
85.445 |
8.669 |
T P |
2ho1_A |
222 |
168 |
160 |
1.81 |
13.75 |
85.427 |
8.375 |
T P |
2vq2_A |
220 |
168 |
159 |
1.93 |
14.47 |
82.203 |
7.822 |
T P |
2pl2_A |
194 |
168 |
153 |
1.86 |
13.73 |
81.772 |
7.790 |
T P |
1xnf_B |
262 |
168 |
144 |
1.87 |
17.36 |
76.997 |
7.321 |
T P |
2e2e_A |
171 |
168 |
132 |
1.67 |
18.94 |
73.086 |
7.461 |
T P |
2gw1_A |
487 |
168 |
150 |
2.08 |
12.67 |
73.013 |
6.889 |
T P |
2fo7_A |
136 |
168 |
131 |
1.61 |
18.32 |
72.045 |
7.674 |
T P |
1hh8_A |
192 |
168 |
134 |
2.05 |
9.70 |
69.755 |
6.225 |
T P |
2vsy_A |
547 |
168 |
146 |
2.12 |
13.70 |
69.491 |
6.578 |
T P |
2c2l_A |
281 |
168 |
126 |
1.71 |
20.63 |
69.283 |
6.980 |
T P |
1e96_B |
185 |
168 |
130 |
2.06 |
10.00 |
69.070 |
6.021 |
T P |
2c0l_A |
292 |
168 |
132 |
1.97 |
20.45 |
68.982 |
6.378 |
T P |
3cvq_A |
289 |
168 |
128 |
1.87 |
15.62 |
67.445 |
6.509 |
T P |
1wm5_A |
205 |
168 |
127 |
2.00 |
9.45 |
66.920 |
6.034 |
T P |
1fch_A |
302 |
168 |
131 |
2.07 |
22.90 |
66.914 |
6.030 |
T P |
2vyi_A |
128 |
168 |
118 |
1.37 |
18.64 |
66.860 |
8.028 |
T P |
2dba_A |
148 |
168 |
119 |
1.59 |
19.33 |
66.001 |
7.022 |
T P |
1a17_A |
159 |
168 |
118 |
1.57 |
16.10 |
65.938 |
7.046 |
T P |
2bug_A |
131 |
168 |
119 |
1.57 |
15.97 |
65.048 |
7.140 |
T P |
1ihg_A |
364 |
168 |
118 |
1.70 |
15.25 |
64.988 |
6.539 |
T P |
1qz2_A |
285 |
168 |
115 |
1.51 |
19.13 |
64.474 |
7.156 |
T P |
1wao_1 |
471 |
168 |
115 |
1.68 |
16.52 |
64.466 |
6.446 |
T P |
1p5q_A |
283 |
168 |
115 |
1.51 |
19.13 |
64.218 |
7.127 |
T P |
1elr_A |
128 |
168 |
117 |
1.58 |
13.68 |
64.192 |
6.977 |
T P |
1elw_A |
117 |
168 |
116 |
1.49 |
15.52 |
64.051 |
7.275 |
T P |
2vsn_A |
534 |
168 |
128 |
1.85 |
14.06 |
63.267 |
6.563 |
T P |
2q7f_A |
194 |
168 |
128 |
2.08 |
13.28 |
63.239 |
5.861 |
T P |
2c0m_C |
302 |
168 |
138 |
2.27 |
20.29 |
63.128 |
5.823 |
T P |
3cv0_A |
300 |
168 |
123 |
2.07 |
14.63 |
62.946 |
5.662 |
T P |
2j9q_A |
300 |
168 |
130 |
2.12 |
21.54 |
62.542 |
5.862 |
T P |
1na0_A |
119 |
168 |
113 |
1.49 |
19.47 |
62.362 |
7.108 |
T P |
1kt1_A |
374 |
168 |
110 |
1.50 |
19.09 |
62.119 |
6.888 |
T P |
3edt_B |
258 |
168 |
118 |
2.10 |
18.64 |
61.103 |
5.364 |
T P |
2fbn_A |
153 |
168 |
112 |
1.77 |
19.64 |
60.682 |
5.985 |
T P |
1kt0_A |
357 |
168 |
108 |
1.53 |
16.67 |
60.495 |
6.626 |
T P |
2if4_A |
258 |
168 |
110 |
2.00 |
13.64 |
55.455 |
5.229 |
T P |
3ceq_B |
269 |
168 |
116 |
2.21 |
20.69 |
54.809 |
5.019 |
T P |
1ouv_A |
265 |
168 |
106 |
2.14 |
15.09 |
50.837 |
4.728 |
T P |
1na3_A |
86 |
168 |
85 |
1.15 |
21.18 |
49.018 |
6.799 |
T P |
2avp_A |
68 |
168 |
68 |
0.71 |
20.59 |
40.150 |
8.347 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]