LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_523.5wLII_11389_45
Total number of 3D structures: 41
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
223 |
203 |
0.84 |
20.69 |
89.735 |
21.582 |
T P |
2pl2_A |
194 |
223 |
169 |
1.94 |
16.57 |
66.777 |
8.305 |
T P |
2vq2_A |
220 |
223 |
168 |
2.11 |
13.10 |
60.529 |
7.606 |
T P |
2gw1_A |
487 |
223 |
169 |
2.02 |
15.38 |
60.151 |
7.961 |
T P |
2c0l_A |
292 |
223 |
140 |
1.63 |
19.29 |
58.998 |
8.096 |
T P |
2ho1_A |
222 |
223 |
162 |
2.12 |
14.81 |
58.803 |
7.293 |
T P |
2fi7_A |
223 |
223 |
161 |
2.12 |
14.29 |
58.760 |
7.251 |
T P |
1xnf_B |
262 |
223 |
157 |
2.10 |
14.65 |
57.163 |
7.137 |
T P |
2fo7_A |
136 |
223 |
131 |
1.68 |
22.90 |
53.839 |
7.364 |
T P |
2vsy_A |
547 |
223 |
150 |
2.11 |
10.00 |
51.498 |
6.802 |
T P |
1hh8_A |
192 |
223 |
132 |
2.06 |
9.09 |
51.425 |
6.122 |
T P |
1e96_B |
185 |
223 |
131 |
2.02 |
8.40 |
50.729 |
6.175 |
T P |
2c2l_A |
281 |
223 |
124 |
1.80 |
13.71 |
50.559 |
6.541 |
T P |
1wm5_A |
205 |
223 |
126 |
1.99 |
9.52 |
50.310 |
6.026 |
T P |
2c0m_C |
302 |
223 |
152 |
2.45 |
14.47 |
49.662 |
5.970 |
T P |
1ihg_A |
364 |
223 |
123 |
1.84 |
13.01 |
49.382 |
6.329 |
T P |
2j9q_A |
300 |
223 |
153 |
2.34 |
13.73 |
49.307 |
6.278 |
T P |
3cv0_A |
300 |
223 |
145 |
2.31 |
13.10 |
49.298 |
6.011 |
T P |
1a17_A |
159 |
223 |
117 |
1.56 |
14.53 |
49.125 |
7.040 |
T P |
1fch_A |
302 |
223 |
134 |
2.16 |
11.94 |
49.037 |
5.934 |
T P |
2bug_A |
131 |
223 |
119 |
1.74 |
11.76 |
48.753 |
6.451 |
T P |
2vyi_A |
128 |
223 |
115 |
1.48 |
18.26 |
48.651 |
7.291 |
T P |
1elw_A |
117 |
223 |
116 |
1.46 |
12.93 |
48.312 |
7.455 |
T P |
3cvq_A |
289 |
223 |
146 |
2.48 |
11.64 |
48.133 |
5.662 |
T P |
2vsn_A |
534 |
223 |
141 |
2.13 |
10.64 |
47.950 |
6.322 |
T P |
3ceq_B |
269 |
223 |
129 |
2.16 |
14.73 |
47.855 |
5.706 |
T P |
3edt_B |
258 |
223 |
131 |
2.14 |
16.03 |
47.749 |
5.850 |
T P |
1p5q_A |
283 |
223 |
114 |
1.65 |
14.91 |
47.711 |
6.531 |
T P |
2dba_A |
148 |
223 |
116 |
1.78 |
13.79 |
47.374 |
6.156 |
T P |
2q7f_A |
194 |
223 |
132 |
2.14 |
17.42 |
47.139 |
5.904 |
T P |
1elr_A |
128 |
223 |
115 |
1.74 |
16.52 |
47.101 |
6.238 |
T P |
1qz2_A |
285 |
223 |
112 |
1.68 |
15.18 |
47.011 |
6.291 |
T P |
1wao_1 |
471 |
223 |
113 |
1.74 |
14.16 |
46.860 |
6.148 |
T P |
1kt1_A |
374 |
223 |
114 |
1.70 |
15.79 |
46.742 |
6.322 |
T P |
1na0_A |
119 |
223 |
113 |
1.68 |
24.78 |
45.897 |
6.345 |
T P |
1kt0_A |
357 |
223 |
108 |
1.63 |
15.74 |
44.943 |
6.253 |
T P |
2fbn_A |
153 |
223 |
111 |
1.92 |
14.41 |
43.898 |
5.482 |
T P |
2if4_A |
258 |
223 |
109 |
2.03 |
12.84 |
40.905 |
5.128 |
T P |
1ouv_A |
265 |
223 |
117 |
2.52 |
12.82 |
36.965 |
4.468 |
T P |
1na3_A |
86 |
223 |
84 |
1.29 |
21.43 |
35.815 |
6.033 |
T P |
2avp_A |
68 |
223 |
68 |
0.96 |
22.06 |
29.803 |
6.435 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]