LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_527.5wLII_11390_14
Total number of 3D structures: 78
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2cy2_A
174
156
151
0.52
21.85
96.317
24.246
T P
1tiq_A
173
156
139
1.70
12.23
81.663
7.730
T P
3f0a_A
159
156
134
1.44
11.94
81.360
8.717
T P
3fnc_B
161
156
131
1.51
16.79
79.234
8.129
T P
3fix_A
165
156
132
1.72
11.36
78.320
7.266
T P
1j4j_A
170
156
129
1.57
14.73
77.769
7.726
T P
1ghe_B
171
156
130
1.65
14.62
77.421
7.437
T P
2fiw_A
160
156
121
1.67
24.79
72.910
6.851
T P
1s3z_A
147
156
129
1.92
16.28
70.558
6.375
T P
2i6c_A
160
156
119
1.74
17.65
70.018
6.460
T P
2dxq_A
147
156
121
1.85
15.70
69.106
6.203
T P
2cnt_A
151
156
115
1.68
13.91
68.936
6.479
T P
2fxf_A
164
156
123
1.88
14.63
65.204
6.223
T P
1z4e_A
150
156
123
1.78
17.07
65.180
6.544
T P
2j8m_A
171
156
126
1.94
17.46
65.091
6.187
T P
2fe7_B
166
156
125
2.00
18.40
64.987
5.959
T P
2b3u_B
164
156
125
1.98
13.60
64.946
6.017
T P
3d2m_A
424
156
109
1.75
18.35
64.663
5.896
T P
2eui_A
153
156
122
1.92
17.21
64.555
6.042
T P
1yr0_A
163
156
127
1.93
18.11
64.266
6.259
T P
2r98_A
424
156
110
1.85
18.18
64.243
5.631
T P
2ob0_C
166
156
116
1.83
10.34
64.163
6.008
T P
1wwz_A
157
156
119
1.89
19.33
64.111
5.972
T P
1y9k_B
154
156
111
1.90
17.12
64.093
5.546
T P
1yre_B
187
156
121
2.03
8.26
64.055
5.676
T P
2q7b_A
164
156
122
1.87
12.30
64.026
6.181
T P
3bj7_A
162
156
123
1.96
15.45
63.869
5.970
T P
3fyn_A
152
156
120
1.83
15.83
63.789
6.229
T P
1yvo_B
171
156
125
1.97
16.00
63.403
6.034
T P
2ge3_A
164
156
119
1.86
17.65
63.221
6.086
T P
2jlm_D
182
156
127
2.02
18.11
63.113
5.984
T P
1s7f_A
181
156
121
1.94
12.40
62.910
5.940
T P
3d8p_B
160
156
118
1.79
14.41
62.904
6.239
T P
2z0z_A
194
156
114
1.90
10.53
62.564
5.699
T P
2i79_A
171
156
122
2.00
13.11
62.310
5.808
T P
3exn_A
154
156
123
2.00
14.63
62.066
5.860
T P
2vi7_C
165
156
116
1.83
18.97
61.930
6.012
T P
2z10_A
187
156
114
1.92
9.65
61.797
5.652
T P
2vez_A
165
156
117
1.92
14.53
61.786
5.797
T P
1z9u_B
176
156
119
1.92
11.76
61.777
5.880
T P
2zxv_A
187
156
113
1.86
10.62
61.525
5.774
T P
2pdo_D
142
156
111
1.71
20.72
61.126
6.137
T P
2bei_B
159
156
120
2.00
16.67
61.036
5.710
T P
1qso_A
149
156
127
1.99
13.39
61.021
6.067
T P
1i12_D
157
156
115
1.93
15.65
61.016
5.656
T P
1qsm_D
152
156
128
1.97
12.50
60.992
6.182
T P
1nsl_C
180
156
116
1.95
12.07
60.931
5.662
T P
2bl1_A
170
156
126
2.09
17.46
60.269
5.763
T P
1i1d_D
161
156
114
2.00
15.79
60.219
5.431
T P
2b5g_B
159
156
122
2.03
13.93
59.819
5.738
T P
3dr6_A
172
156
125
2.09
15.20
59.549
5.712
T P
3fb3_B
149
156
115
1.88
20.00
59.299
5.796
T P
1q2y_A
140
156
109
1.82
17.43
59.101
5.687
T P
1vkc_A
149
156
119
2.02
16.81
58.965
5.620
T P
3eo4_D
162
156
117
2.09
11.11
58.923
5.345
T P
3fbu_A
166
156
118
2.12
9.32
58.920
5.322
T P
3ec4_A
224
156
109
1.80
13.76
58.656
5.731
T P
2g3t_A
169
156
126
2.17
13.49
58.572
5.562
T P
1yvk_A
152
156
109
1.90
12.84
58.542
5.445
T P
2b5g_A
164
156
123
2.13
14.63
58.288
5.522
T P
2ae6_A
148
156
112
2.03
16.07
57.980
5.265
T P
2jev_A
169
156
124
2.15
14.52
57.814
5.500
T P
1mk4_A
157
156
108
1.97
19.44
57.048
5.214
T P
2r1i_A
156
156
117
1.97
15.38
56.936
5.656
T P
1vhs_A
165
156
119
2.14
15.13
56.276
5.315
T P
3dsb_A
152
156
119
2.11
14.29
55.854
5.391
T P
2fck_A
174
156
113
2.09
10.62
55.289
5.153
T P
2prb_A
173
156
123
2.38
15.45
55.264
4.961
T P
1i21_B
157
156
112
2.00
16.07
54.819
5.343
T P
1u6m_A
189
156
118
2.26
19.49
54.504
5.005
T P
3eg7_B
175
156
113
2.17
13.27
53.601
4.969
T P
2bue_A
179
156
121
2.46
13.22
53.438
4.720
T P
1s7k_A
158
156
111
2.05
11.71
53.249
5.165
T P
1y9w_A
140
156
83
1.61
14.46
50.835
4.849
T P
2g3a_A
137
156
83
1.75
18.07
49.900
4.476
T P
2ozh_A
142
156
101
2.23
19.80
49.845
4.329
T P
2pr8_A
173
156
105
2.41
13.33
46.920
4.180
T P
1yx0_A
151
156
98
2.21
12.24
46.758
4.248
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]