LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_532.5wLII_11390_53
Total number of 3D structures: 71
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3f4k_A
254
231
207
0.84
19.32
88.614
21.964
T P
3e7p_A
253
231
203
1.37
17.24
82.980
13.844
T P
3bus_A
251
231
171
2.11
14.04
58.214
7.740
T P
2o57_A
282
231
165
2.16
12.73
54.147
7.305
T P
1xxl_A
234
231
155
2.18
14.19
52.394
6.787
T P
1ve3_B
226
231
137
1.94
12.41
51.743
6.723
T P
1vl5_A
231
231
143
2.04
13.29
50.751
6.674
T P
1p91_A
268
231
130
1.82
20.00
50.597
6.757
T P
3dlc_A
219
231
129
1.89
13.95
49.998
6.495
T P
2fk8_A
281
231
165
2.30
10.30
49.462
6.883
T P
1tpy_A
285
231
164
2.32
12.80
49.355
6.791
T P
1kpi_A
291
231
161
2.30
9.32
49.235
6.718
T P
2p35_A
245
231
131
1.94
18.32
49.098
6.406
T P
2nxc_A
249
231
127
1.90
20.47
49.052
6.345
T P
3d2l_C
242
231
136
2.05
16.18
48.184
6.313
T P
1y8c_A
246
231
138
2.05
17.39
48.150
6.417
T P
2pxx_A
213
231
128
1.96
17.19
48.127
6.199
T P
1l1e_A
272
231
156
2.30
12.18
48.037
6.488
T P
2gh1_A
281
231
143
2.18
14.69
48.014
6.269
T P
1qzz_A
340
231
142
2.23
13.38
47.850
6.105
T P
1wzn_A
244
231
133
1.94
15.04
47.836
6.513
T P
1kph_B
285
231
160
2.36
11.88
47.745
6.517
T P
2p7i_B
229
231
139
2.06
16.55
47.700
6.437
T P
3dtn_A
220
231
136
2.04
14.71
47.607
6.364
T P
2b3t_A
276
231
130
1.85
20.00
47.483
6.653
T P
1kpg_A
285
231
164
2.41
12.20
47.480
6.529
T P
1o54_A
265
231
130
1.97
14.62
47.452
6.265
T P
3cjt_A
254
231
124
1.94
20.97
47.444
6.091
T P
3ege_A
247
231
137
2.09
12.41
47.253
6.259
T P
2p8j_B
207
231
138
2.04
11.59
46.832
6.443
T P
3g5l_A
222
231
139
2.10
13.67
46.440
6.311
T P
2avn_A
247
231
132
2.06
17.42
46.035
6.119
T P
2yqz_A
261
231
128
2.00
13.28
45.655
6.086
T P
1ri5_A
252
231
140
2.22
12.86
45.517
6.025
T P
2gs9_A
211
231
124
1.93
15.32
45.210
6.119
T P
1vlm_A
207
231
127
2.04
20.47
45.141
5.927
T P
2as0_A
396
231
131
2.09
20.61
44.928
5.977
T P
2pjd_A
334
231
119
1.99
15.13
44.912
5.706
T P
3bkw_A
219
231
134
2.08
18.66
44.841
6.137
T P
1nkv_C
249
231
156
2.49
16.03
44.773
6.019
T P
2ex4_A
221
231
138
2.10
15.94
44.656
6.267
T P
1t43_A
274
231
127
2.09
19.69
44.574
5.787
T P
3e23_A
198
231
137
2.10
13.14
44.457
6.240
T P
3ccf_B
242
231
134
2.28
15.67
44.332
5.622
T P
3dh0_B
190
231
127
2.15
15.75
44.315
5.651
T P
1im8_A
225
231
136
2.21
12.50
43.416
5.888
T P
3dli_A
221
231
130
2.21
13.08
43.392
5.622
T P
3bxo_A
236
231
132
2.25
12.88
43.350
5.612
T P
2yxe_A
214
231
116
2.08
19.83
42.483
5.317
T P
1dus_A
194
231
124
1.96
12.90
41.683
6.029
T P
1sg9_A
274
231
122
2.03
13.93
41.572
5.733
T P
3bkx_A
274
231
136
2.40
11.03
41.435
5.450
T P
3cgg_A
186
231
117
2.05
16.24
41.311
5.454
T P
1l3i_A
186
231
128
2.09
19.53
41.298
5.832
T P
1d2g_A
292
231
135
2.35
17.78
41.212
5.521
T P
1r8x_B
284
231
135
2.38
17.78
41.200
5.438
T P
1nv8_A
271
231
118
2.03
14.41
41.176
5.552
T P
3dmg_A
371
231
122
2.02
10.66
41.134
5.758
T P
1vq1_A
266
231
122
2.14
16.39
40.915
5.447
T P
3e8s_A
220
231
127
2.14
15.75
40.604
5.677
T P
3cc8_A
211
231
132
2.18
12.12
40.231
5.792
T P
1dl5_A
317
231
119
2.16
18.49
40.155
5.267
T P
1i1n_A
224
231
113
2.10
18.58
39.996
5.133
T P
1xva_A
292
231
133
2.35
18.05
39.918
5.433
T P
1r74_B
279
231
134
2.34
15.67
39.729
5.484
T P
2azt_B
277
231
134
2.38
15.67
39.553
5.397
T P
1g6q_1
328
231
115
2.10
16.52
38.801
5.231
T P
1r18_A
223
231
114
2.15
13.16
37.337
5.062
T P
1jg1_A
215
231
115
2.14
13.91
35.659
5.136
T P
1vbf_B
226
231
110
2.23
13.64
33.681
4.721
T P
2pbf_A
218
231
111
2.23
15.32
32.615
4.760
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]