LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_537.5wLII_11390_73
Total number of 3D structures: 48
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
365 |
332 |
0.85 |
9.64 |
89.254 |
34.854 |
T P |
2vq2_A |
220 |
365 |
199 |
1.98 |
7.04 |
46.822 |
9.546 |
T P |
2fi7_A |
223 |
365 |
186 |
1.97 |
10.22 |
44.848 |
8.969 |
T P |
2ho1_A |
222 |
365 |
184 |
1.96 |
9.78 |
43.983 |
8.925 |
T P |
2pl2_A |
194 |
365 |
174 |
1.89 |
8.05 |
42.585 |
8.742 |
T P |
2gw1_A |
487 |
365 |
186 |
2.31 |
5.91 |
38.162 |
7.714 |
T P |
3edt_B |
258 |
365 |
163 |
2.04 |
11.66 |
38.075 |
7.634 |
T P |
1hh8_A |
192 |
365 |
147 |
1.60 |
10.88 |
37.206 |
8.654 |
T P |
3ceq_B |
269 |
365 |
160 |
2.07 |
12.50 |
37.121 |
7.371 |
T P |
1e96_B |
185 |
365 |
147 |
1.64 |
10.20 |
36.965 |
8.453 |
T P |
1xnf_B |
262 |
365 |
163 |
2.04 |
8.59 |
36.955 |
7.622 |
T P |
1wm5_A |
205 |
365 |
146 |
1.54 |
10.27 |
36.847 |
8.880 |
T P |
2fo7_A |
136 |
365 |
136 |
1.01 |
3.68 |
36.149 |
12.264 |
T P |
2q7f_A |
194 |
365 |
171 |
2.27 |
8.19 |
36.110 |
7.220 |
T P |
2c2l_A |
281 |
365 |
123 |
1.41 |
8.13 |
32.913 |
8.150 |
T P |
2vsy_A |
547 |
365 |
157 |
2.30 |
7.64 |
32.512 |
6.544 |
T P |
1p5q_A |
283 |
365 |
121 |
1.33 |
4.13 |
32.245 |
8.481 |
T P |
1qz2_A |
285 |
365 |
120 |
1.14 |
4.17 |
32.069 |
9.688 |
T P |
1wao_1 |
471 |
365 |
134 |
1.93 |
13.43 |
32.002 |
6.611 |
T P |
2j9q_A |
300 |
365 |
161 |
2.32 |
11.80 |
31.529 |
6.653 |
T P |
2vsn_A |
534 |
365 |
147 |
2.12 |
10.20 |
31.496 |
6.613 |
T P |
1ihg_A |
364 |
365 |
123 |
1.63 |
13.82 |
31.343 |
7.118 |
T P |
2vyi_A |
128 |
365 |
119 |
1.17 |
5.88 |
31.218 |
9.378 |
T P |
2c0l_A |
292 |
365 |
146 |
2.24 |
9.59 |
30.805 |
6.237 |
T P |
1na0_A |
119 |
365 |
118 |
1.28 |
3.39 |
30.763 |
8.546 |
T P |
2dba_A |
148 |
365 |
122 |
1.56 |
6.56 |
30.715 |
7.369 |
T P |
2fbn_A |
153 |
365 |
118 |
1.42 |
4.24 |
30.612 |
7.765 |
T P |
2c0m_C |
302 |
365 |
152 |
2.51 |
7.89 |
30.472 |
5.827 |
T P |
1a17_A |
159 |
365 |
120 |
1.63 |
13.33 |
30.368 |
6.930 |
T P |
1kt1_A |
374 |
365 |
119 |
1.73 |
12.61 |
30.276 |
6.513 |
T P |
1elw_A |
117 |
365 |
116 |
1.24 |
7.76 |
30.094 |
8.625 |
T P |
2bug_A |
131 |
365 |
118 |
1.66 |
10.17 |
29.589 |
6.715 |
T P |
1fch_A |
302 |
365 |
134 |
2.13 |
8.96 |
29.251 |
6.015 |
T P |
1elr_A |
128 |
365 |
119 |
1.84 |
5.88 |
29.212 |
6.132 |
T P |
3cvq_A |
289 |
365 |
143 |
2.16 |
10.49 |
29.033 |
6.318 |
T P |
3cv0_A |
300 |
365 |
136 |
2.18 |
11.76 |
28.554 |
5.961 |
T P |
1kt0_A |
357 |
365 |
113 |
1.80 |
12.39 |
28.476 |
5.939 |
T P |
2if4_A |
258 |
365 |
108 |
2.04 |
4.63 |
24.713 |
5.045 |
T P |
1na3_A |
86 |
365 |
85 |
1.33 |
11.76 |
21.989 |
5.962 |
T P |
1ouv_A |
265 |
365 |
133 |
2.63 |
9.02 |
21.879 |
4.878 |
T P |
3e33_A |
323 |
365 |
106 |
2.72 |
6.60 |
18.381 |
3.757 |
T P |
2avp_A |
68 |
365 |
68 |
1.09 |
11.76 |
18.020 |
5.716 |
T P |
1o5m_A |
315 |
365 |
94 |
2.65 |
5.32 |
17.674 |
3.418 |
T P |
1o1t_A |
315 |
365 |
95 |
2.62 |
1.05 |
16.984 |
3.490 |
T P |
3e37_A |
315 |
365 |
93 |
2.65 |
6.45 |
16.824 |
3.380 |
T P |
2h6f_A |
315 |
365 |
91 |
2.64 |
2.20 |
16.516 |
3.319 |
T P |
1qbq_A |
312 |
365 |
92 |
2.61 |
6.52 |
16.387 |
3.397 |
T P |
1xi4_A |
1630 |
365 |
87 |
2.73 |
8.05 |
15.633 |
3.075 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]