LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_545.5wLII_11391_7
Total number of 3D structures: 41
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
148 |
143 |
0.63 |
22.38 |
96.121 |
19.679 |
T P |
2fi7_A |
223 |
148 |
139 |
1.54 |
14.39 |
87.636 |
8.452 |
T P |
2ho1_A |
222 |
148 |
139 |
1.55 |
13.67 |
87.450 |
8.415 |
T P |
2vq2_A |
220 |
148 |
139 |
1.61 |
16.55 |
86.241 |
8.149 |
T P |
2pl2_A |
194 |
148 |
139 |
1.83 |
14.39 |
83.905 |
7.190 |
T P |
2gw1_A |
487 |
148 |
129 |
1.77 |
13.95 |
79.091 |
6.887 |
T P |
1xnf_B |
262 |
148 |
135 |
2.02 |
16.30 |
77.303 |
6.370 |
T P |
2c0l_A |
292 |
148 |
126 |
1.81 |
15.87 |
76.588 |
6.603 |
T P |
2fo7_A |
136 |
148 |
125 |
1.95 |
16.80 |
75.244 |
6.099 |
T P |
1hh8_A |
192 |
148 |
125 |
1.90 |
12.00 |
74.618 |
6.261 |
T P |
2c2l_A |
281 |
148 |
118 |
1.67 |
13.56 |
74.501 |
6.673 |
T P |
1e96_B |
185 |
148 |
123 |
1.94 |
11.38 |
74.170 |
6.024 |
T P |
2bug_A |
131 |
148 |
118 |
1.58 |
17.80 |
74.152 |
7.019 |
T P |
2vgy_A |
132 |
148 |
120 |
1.69 |
10.83 |
74.093 |
6.689 |
T P |
1fch_A |
302 |
148 |
122 |
1.89 |
15.57 |
73.632 |
6.122 |
T P |
2vsy_A |
547 |
148 |
128 |
1.97 |
12.50 |
73.148 |
6.175 |
T P |
2vyi_A |
128 |
148 |
116 |
1.58 |
15.52 |
72.961 |
6.886 |
T P |
1a17_A |
159 |
148 |
115 |
1.65 |
19.13 |
72.757 |
6.585 |
T P |
1elr_A |
128 |
148 |
116 |
1.65 |
17.24 |
72.140 |
6.616 |
T P |
2dba_A |
148 |
148 |
116 |
1.68 |
14.66 |
71.681 |
6.501 |
T P |
1elw_A |
117 |
148 |
116 |
1.73 |
13.79 |
71.352 |
6.335 |
T P |
1qz2_A |
285 |
148 |
118 |
1.93 |
12.71 |
70.972 |
5.811 |
T P |
1p5q_A |
283 |
148 |
116 |
1.89 |
12.93 |
70.680 |
5.828 |
T P |
1wm5_A |
205 |
148 |
121 |
1.93 |
11.57 |
70.505 |
5.955 |
T P |
1wao_1 |
471 |
148 |
115 |
2.05 |
19.13 |
70.289 |
5.356 |
T P |
3cvq_A |
289 |
148 |
117 |
1.96 |
17.09 |
69.028 |
5.669 |
T P |
1kt1_A |
374 |
148 |
115 |
1.97 |
13.04 |
68.545 |
5.555 |
T P |
1ihg_A |
364 |
148 |
111 |
1.87 |
13.51 |
67.845 |
5.646 |
T P |
2q7f_A |
194 |
148 |
116 |
2.05 |
13.79 |
67.237 |
5.395 |
T P |
1kt0_A |
357 |
148 |
110 |
1.92 |
11.82 |
66.283 |
5.449 |
T P |
2c0m_C |
302 |
148 |
115 |
2.06 |
13.04 |
65.294 |
5.319 |
T P |
3edt_B |
258 |
148 |
108 |
2.07 |
13.89 |
63.618 |
4.967 |
T P |
1na0_A |
119 |
148 |
105 |
1.96 |
16.19 |
63.608 |
5.108 |
T P |
2j9q_A |
300 |
148 |
116 |
2.10 |
12.93 |
63.395 |
5.272 |
T P |
3cv0_A |
300 |
148 |
111 |
2.18 |
14.41 |
62.874 |
4.866 |
T P |
2vsn_A |
534 |
148 |
116 |
2.04 |
12.93 |
61.803 |
5.432 |
T P |
2fbn_A |
153 |
148 |
109 |
2.00 |
13.76 |
61.555 |
5.203 |
T P |
2if4_A |
258 |
148 |
103 |
1.91 |
15.53 |
60.995 |
5.128 |
T P |
3ceq_B |
269 |
148 |
111 |
2.27 |
14.41 |
55.192 |
4.686 |
T P |
1na3_A |
86 |
148 |
83 |
1.58 |
16.87 |
51.799 |
4.932 |
T P |
2avp_A |
68 |
148 |
68 |
0.83 |
25.00 |
45.321 |
7.306 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]