LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_57.5wLII_10954_40
Total number of 3D structures: 72
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3cio_A
255
221
213
0.59
23.94
95.884
30.724
T P
2ved_B
254
221
205
1.42
20.49
87.757
13.463
T P
3bfv_A
241
221
201
1.36
21.39
86.100
13.807
T P
1ion_A
243
221
135
1.71
16.30
56.833
7.454
T P
1g3q_A
237
221
135
1.69
18.52
56.775
7.542
T P
1hyq_A
232
221
137
1.86
18.98
55.442
6.990
T P
1wcv_1
243
221
133
1.73
19.55
54.781
7.283
T P
2bek_A
244
221
134
1.78
18.66
51.721
7.124
T P
3ea0_B
242
221
132
1.96
16.67
44.965
6.413
T P
2oze_A
284
221
126
1.94
23.02
44.196
6.188
T P
3fkq_A
354
221
127
1.96
14.96
44.114
6.179
T P
3end_A
268
221
124
2.04
16.13
42.837
5.806
T P
1g20_H
262
221
124
2.14
16.13
40.215
5.542
T P
1ihu_A
540
221
111
2.00
18.92
39.377
5.290
T P
1de0_A
289
221
123
2.27
17.07
39.150
5.192
T P
2ph1_A
247
221
118
2.10
19.49
39.146
5.368
T P
1cp2_A
269
221
122
2.17
14.75
39.060
5.375
T P
1xdb_A
289
221
121
2.19
16.53
39.012
5.294
T P
3dm5_A
416
221
112
2.09
18.75
38.850
5.122
T P
2c8v_A
271
221
120
2.16
16.67
38.806
5.309
T P
3dm9_B
305
221
113
2.10
18.58
38.769
5.132
T P
2afh_E
289
221
120
2.29
16.67
38.524
5.025
T P
1rj9_B
282
221
112
1.99
22.32
38.237
5.362
T P
1rw4_A
271
221
119
2.15
16.81
38.155
5.288
T P
1qzx_A
425
221
110
1.98
19.09
38.149
5.281
T P
2j7p_A
292
221
111
1.99
22.52
38.015
5.319
T P
1j8m_F
295
221
110
2.07
19.09
37.916
5.070
T P
2j37_W
479
221
112
2.06
19.64
37.808
5.197
T P
1xd8_A
289
221
117
2.23
15.38
37.723
5.031
T P
1jpn_A
296
221
109
2.00
22.94
37.544
5.191
T P
2j28_9
430
221
110
2.06
13.64
37.302
5.094
T P
1ls1_A
289
221
113
2.18
21.24
36.903
4.955
T P
1zu4_A
305
221
116
2.33
18.10
36.899
4.766
T P
2ng1_A
293
221
110
2.10
23.64
36.889
5.005
T P
2j45_A
297
221
111
2.07
22.52
36.493
5.114
T P
1yrb_B
260
221
104
2.01
11.54
35.947
4.930
T P
1fts_A
295
221
110
2.23
20.91
35.827
4.722
T P
1j8y_F
291
221
103
2.00
18.45
35.799
4.916
T P
1eg7_A
549
221
116
2.27
16.38
35.631
4.894
T P
1fpm_A
549
221
115
2.25
15.65
35.236
4.900
T P
2ffh_A
407
221
103
2.04
21.36
35.221
4.810
T P
2c03_B
297
221
104
2.11
22.12
35.198
4.707
T P
2v3c_C
403
221
105
2.22
18.10
34.697
4.524
T P
1ffh_A
287
221
101
2.12
23.76
34.564
4.551
T P
3e70_C
307
221
110
2.41
14.55
33.740
4.382
T P
2qm7_A
314
221
97
1.93
17.53
33.720
4.786
T P
2p67_A
302
221
96
2.03
11.46
33.423
4.507
T P
3do6_A
543
221
111
2.34
14.41
33.257
4.548
T P
2qm8_A
320
221
94
1.94
18.09
33.071
4.617
T P
3cwq_A
206
221
88
1.92
18.18
31.472
4.365
T P
2ax4_A
198
221
84
2.03
10.71
28.984
3.939
T P
2yvu_A
179
221
86
2.03
13.95
28.933
4.042
T P
2gks_B
529
221
83
2.00
15.66
28.482
3.960
T P
3cr8_A
493
221
80
2.05
17.50
27.493
3.717
T P
1qvr_A
803
221
78
2.22
19.23
25.406
3.360
T P
3cwg_B
507
221
63
2.54
3.17
19.585
2.383
T P
1bg1_A
559
221
59
2.30
5.08
19.491
2.461
T P
1f5n_A
570
221
55
2.44
5.45
18.342
2.169
T P
2v1d_A
666
221
60
2.63
3.33
17.953
2.194
T P
2iw5_A
666
221
59
2.64
3.39
17.889
2.151
T P
2h94_A
647
221
62
2.70
4.84
17.749
2.212
T P
2z3y_A
643
221
57
2.58
3.51
17.383
2.124
T P
1cii_A
602
221
58
2.57
10.34
17.375
2.169
T P
2hko_A
647
221
62
2.90
1.61
17.261
2.065
T P
2dw4_A
634
221
54
2.49
5.56
16.799
2.089
T P
1zvu_A
685
221
51
2.69
3.92
14.853
1.825
T P
1m1j_D
194
221
33
1.55
3.03
14.058
1.996
T P
2i1j_A
481
221
45
2.62
2.22
13.364
1.653
T P
1ei3_A
159
221
33
1.99
3.03
13.003
1.581
T P
2v71_A
160
221
25
1.74
12.00
10.684
1.358
T P
1c1g_A
284
221
24
1.90
12.50
10.288
1.203
T P
1n3k_A
130
221
29
2.45
6.90
9.133
1.136
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]