LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_58.5wLII_10954_58
Total number of 3D structures: 73
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1yk9_A
184
181
175
0.63
15.43
95.660
23.861
T P
1cul_B
190
181
166
1.93
14.46
77.185
8.164
T P
2w01_A
201
181
170
1.99
15.88
76.699
8.124
T P
3et6_B
183
181
165
2.01
15.15
75.672
7.808
T P
1wc1_A
196
181
165
2.12
17.58
74.694
7.423
T P
1azs_B
189
181
165
1.96
13.94
72.430
8.023
T P
1cs4_A
189
181
162
2.04
14.20
72.372
7.561
T P
1wc3_A
198
181
161
2.02
17.39
71.638
7.599
T P
1azs_A
190
181
161
2.10
14.29
71.521
7.322
T P
3et6_A
184
181
166
2.09
15.66
71.049
7.571
T P
1fx2_A
235
181
155
1.93
13.55
70.603
7.631
T P
1cul_A
189
181
161
2.06
15.53
70.441
7.458
T P
1ybt_B
172
181
149
2.01
17.45
69.104
7.053
T P
1fx4_A
231
181
160
2.08
15.00
66.768
7.329
T P
1ybu_A
166
181
150
1.99
17.33
64.587
7.190
T P
1y10_C
363
181
140
2.06
15.00
58.292
6.485
T P
1w25_A
454
181
110
2.14
13.64
42.466
4.902
T P
3b60_A
572
181
63
2.33
7.94
25.538
2.597
T P
2fb8_A
259
181
64
2.44
4.69
24.346
2.524
T P
2fr7_A
397
181
64
2.59
12.50
23.295
2.378
T P
2jkq_A
258
181
63
2.50
4.76
23.063
2.423
T P
3c4c_A
258
181
59
2.53
15.25
22.930
2.240
T P
2j0k_B
612
181
60
2.60
5.00
22.814
2.224
T P
2ofu_A
273
181
62
2.63
8.06
22.466
2.274
T P
2pl0_A
268
181
60
2.46
10.00
22.278
2.342
T P
3bym_A
272
181
58
2.44
6.90
21.730
2.282
T P
1o6y_A
260
181
58
2.44
6.90
21.595
2.281
T P
3lck_A
271
181
59
2.55
5.08
21.539
2.229
T P
3bys_A
255
181
57
2.50
10.53
21.427
2.193
T P
1qpc_A
271
181
58
2.45
10.34
21.423
2.272
T P
2ijm_B
261
181
54
2.53
9.26
21.316
2.055
T P
1uwj_A
264
181
63
2.73
4.76
21.239
2.226
T P
1mru_B
271
181
57
2.44
3.51
21.122
2.248
T P
1uwh_A
264
181
56
2.58
3.57
21.040
2.087
T P
2qp2_A
498
181
57
2.69
5.26
21.024
2.040
T P
2zm1_A
271
181
59
2.86
6.78
20.950
1.991
T P
1ys7_B
226
181
57
2.51
8.77
20.730
2.186
T P
3bz3_A
259
181
54
2.58
7.41
20.701
2.013
T P
3d4q_A
264
181
62
2.79
4.84
20.468
2.144
T P
2ofv_A
244
181
56
2.65
7.14
20.398
2.037
T P
1qpd_A
271
181
52
2.39
13.46
20.106
2.092
T P
3f61_A
271
181
55
2.70
3.64
20.026
1.967
T P
2j0l_A
276
181
52
2.50
7.69
19.968
2.002
T P
3f69_B
283
181
51
2.30
3.92
19.846
2.129
T P
2of2_A
271
181
51
2.40
11.76
19.801
2.037
T P
1mp8_A
252
181
50
2.33
8.00
19.706
2.057
T P
2v8o_A
429
181
53
2.72
1.89
19.569
1.876
T P
2ayx_A
254
181
49
2.66
6.12
19.220
1.777
T P
2jko_A
256
181
48
2.46
12.50
18.652
1.874
T P
1ihu_A
540
181
48
2.66
6.25
18.441
1.741
T P
1b0u_A
258
181
47
2.68
4.26
17.991
1.692
T P
1dyq_A
228
181
46
2.63
13.04
17.438
1.683
T P
2j0j_A
611
181
44
2.37
4.55
17.172
1.780
T P
1pf4_A
520
181
45
2.63
4.44
17.100
1.647
T P
2jvk_A
132
181
40
2.29
5.00
17.096
1.672
T P
2hyd_A
578
181
47
2.88
6.38
16.413
1.577
T P
1w36_B
1158
181
41
2.43
4.88
16.275
1.623
T P
1mvo_A
121
181
37
2.14
8.11
16.124
1.652
T P
2ayz_A
133
181
41
2.45
4.88
15.869
1.610
T P
2jkm_A
260
181
43
2.64
6.98
15.858
1.569
T P
2jvj_A
132
181
39
2.60
7.69
14.769
1.445
T P
1g29_1
372
181
40
2.74
10.00
14.518
1.409
T P
1srr_C
121
181
38
2.66
5.26
14.513
1.375
T P
2a9o_A
117
181
34
2.35
5.88
14.499
1.388
T P
2jvi_A
132
181
35
2.45
14.29
14.222
1.370
T P
2iyn_B
124
181
38
2.83
5.26
14.032
1.297
T P
1nat_A
119
181
37
2.85
5.41
13.895
1.254
T P
2a9r_A
117
181
33
2.39
6.06
13.559
1.324
T P
2p08_B
110
181
32
2.26
6.25
13.542
1.353
T P
1f51_E
119
181
35
2.67
5.71
13.343
1.264
T P
2og8_B
249
181
36
2.80
0.00
13.168
1.240
T P
1mb3_A
117
181
35
2.92
2.86
13.145
1.160
T P
2p04_A
107
181
29
2.59
6.90
11.349
1.076
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]