LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_61.5wLII_10961_10
Total number of 3D structures: 59
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
3dwn_A |
421 |
385 |
204 |
1.87 |
9.31 |
43.137 |
10.375 |
T P |
2r4o_A |
421 |
385 |
209 |
1.97 |
9.09 |
40.927 |
10.089 |
T P |
2r4n_A |
421 |
385 |
201 |
2.00 |
8.46 |
39.874 |
9.591 |
T P |
1t16_A |
427 |
385 |
197 |
1.89 |
8.63 |
39.783 |
9.923 |
T P |
2r4p_A |
418 |
385 |
194 |
1.96 |
10.31 |
38.327 |
9.429 |
T P |
2r4l_B |
421 |
385 |
199 |
1.96 |
10.05 |
37.787 |
9.661 |
T P |
2r89_A |
363 |
385 |
157 |
2.13 |
10.19 |
28.863 |
7.044 |
T P |
2r8a_A |
360 |
385 |
155 |
2.13 |
9.68 |
28.712 |
6.959 |
T P |
3dwo_X |
444 |
385 |
165 |
2.41 |
10.30 |
28.150 |
6.571 |
T P |
2r88_A |
365 |
385 |
152 |
2.32 |
11.18 |
27.865 |
6.290 |
T P |
2mpr_A |
421 |
385 |
122 |
2.38 |
9.02 |
22.731 |
4.921 |
T P |
2o4v_A |
411 |
385 |
124 |
2.30 |
10.48 |
22.612 |
5.169 |
T P |
1oh2_Q |
413 |
385 |
132 |
2.66 |
9.85 |
22.474 |
4.780 |
T P |
1a0s_P |
413 |
385 |
131 |
2.48 |
6.87 |
21.985 |
5.073 |
T P |
1fcp_A |
705 |
385 |
122 |
2.45 |
6.56 |
21.495 |
4.793 |
T P |
1gfm_A |
340 |
385 |
126 |
2.48 |
12.70 |
21.184 |
4.877 |
T P |
1qff_A |
707 |
385 |
122 |
2.39 |
7.38 |
21.089 |
4.897 |
T P |
1xkw_A |
655 |
385 |
118 |
2.55 |
6.78 |
20.803 |
4.446 |
T P |
2fgr_A |
332 |
385 |
119 |
2.42 |
6.72 |
20.758 |
4.722 |
T P |
1qfg_A |
707 |
385 |
114 |
2.53 |
5.26 |
20.702 |
4.336 |
T P |
2fcp_A |
705 |
385 |
113 |
2.61 |
4.42 |
20.606 |
4.168 |
T P |
1e54_A |
332 |
385 |
114 |
2.35 |
6.14 |
20.419 |
4.653 |
T P |
1gfn_A |
327 |
385 |
117 |
2.33 |
9.40 |
20.401 |
4.808 |
T P |
2ixx_A |
354 |
385 |
113 |
2.53 |
12.39 |
20.371 |
4.300 |
T P |
1gfo_A |
340 |
385 |
118 |
2.36 |
11.02 |
20.183 |
4.795 |
T P |
1gfp_A |
340 |
385 |
119 |
2.45 |
10.92 |
20.008 |
4.666 |
T P |
2j1n_A |
346 |
385 |
111 |
2.48 |
11.71 |
19.950 |
4.294 |
T P |
1kmo_A |
661 |
385 |
115 |
2.42 |
6.09 |
19.936 |
4.555 |
T P |
1hxu_A |
340 |
385 |
114 |
2.53 |
8.77 |
19.924 |
4.333 |
T P |
2fgq_X |
330 |
385 |
112 |
2.54 |
8.04 |
19.868 |
4.247 |
T P |
1po0_A |
661 |
385 |
111 |
2.36 |
6.31 |
19.835 |
4.519 |
T P |
1by5_A |
697 |
385 |
110 |
2.34 |
7.27 |
19.631 |
4.508 |
T P |
2iah_A |
752 |
385 |
114 |
2.55 |
10.53 |
19.554 |
4.308 |
T P |
1mpf_A |
340 |
385 |
104 |
2.53 |
9.62 |
19.475 |
3.953 |
T P |
1pho_A |
330 |
385 |
112 |
2.50 |
4.46 |
19.313 |
4.302 |
T P |
1fi1_A |
707 |
385 |
114 |
2.50 |
6.14 |
19.270 |
4.389 |
T P |
2ixw_A |
343 |
385 |
109 |
2.49 |
6.42 |
19.130 |
4.216 |
T P |
1bt9_A |
340 |
385 |
108 |
2.43 |
4.63 |
18.838 |
4.268 |
T P |
1gfq_A |
340 |
385 |
110 |
2.57 |
8.18 |
18.795 |
4.123 |
T P |
2jqy_A |
280 |
385 |
110 |
2.66 |
8.18 |
18.728 |
3.988 |
T P |
1osm_A |
342 |
385 |
118 |
2.56 |
9.32 |
18.679 |
4.429 |
T P |
1kmp_A |
647 |
385 |
105 |
2.42 |
0.95 |
18.628 |
4.164 |
T P |
2iwv_A |
277 |
385 |
112 |
2.68 |
5.36 |
18.608 |
4.029 |
T P |
2zfg_A |
339 |
385 |
106 |
2.46 |
10.38 |
18.583 |
4.144 |
T P |
1hxx_A |
340 |
385 |
108 |
2.58 |
4.63 |
18.519 |
4.037 |
T P |
1af6_A |
421 |
385 |
108 |
2.68 |
7.41 |
18.501 |
3.888 |
T P |
1hxt_A |
340 |
385 |
101 |
2.51 |
12.87 |
18.500 |
3.867 |
T P |
1xkh_A |
687 |
385 |
109 |
2.60 |
4.59 |
18.288 |
4.045 |
T P |
2hdf_A |
584 |
385 |
108 |
2.61 |
8.33 |
18.168 |
3.985 |
T P |
3bs0_A |
414 |
385 |
103 |
2.67 |
5.83 |
17.477 |
3.716 |
T P |
2f1c_X |
252 |
385 |
96 |
2.53 |
8.33 |
17.167 |
3.644 |
T P |
2hdi_A |
598 |
385 |
91 |
2.18 |
12.09 |
16.790 |
3.997 |
T P |
3bry_A |
389 |
385 |
98 |
2.70 |
5.10 |
16.205 |
3.499 |
T P |
1qjp_A |
137 |
385 |
71 |
2.11 |
16.90 |
14.828 |
3.206 |
T P |
1i78_A |
297 |
385 |
87 |
2.50 |
6.90 |
13.850 |
3.348 |
T P |
1g90_A |
176 |
385 |
71 |
2.47 |
2.82 |
11.909 |
2.765 |
T P |
2ge4_A |
177 |
385 |
61 |
2.33 |
18.03 |
11.522 |
2.512 |
T P |
1qj8_A |
148 |
385 |
67 |
2.53 |
5.97 |
11.514 |
2.546 |
T P |
1bxw_A |
172 |
385 |
64 |
2.45 |
7.81 |
11.390 |
2.513 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]