LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_62.5wLII_10961_14
Total number of 3D structures: 19
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2e1q_A |
1307 |
165 |
149 |
1.61 |
18.79 |
85.093 |
8.722 |
T P |
1wyg_A |
1297 |
165 |
148 |
1.55 |
17.57 |
84.918 |
8.953 |
T P |
2ckj_B |
1289 |
165 |
149 |
1.54 |
19.46 |
84.660 |
9.094 |
T P |
1n5x_A |
1290 |
165 |
149 |
1.56 |
18.79 |
84.312 |
9.000 |
T P |
1v97_A |
1298 |
165 |
149 |
1.63 |
18.12 |
84.163 |
8.636 |
T P |
2e3t_A |
1291 |
165 |
144 |
1.51 |
19.44 |
82.709 |
8.950 |
T P |
1fiq_B |
305 |
165 |
145 |
1.63 |
18.62 |
82.071 |
8.375 |
T P |
3b9j_B |
305 |
165 |
144 |
1.60 |
19.44 |
81.632 |
8.447 |
T P |
3etr_B |
305 |
165 |
144 |
1.61 |
19.44 |
81.629 |
8.436 |
T P |
1ffu_C |
287 |
165 |
137 |
1.86 |
6.57 |
74.616 |
6.989 |
T P |
1ffv_C |
287 |
165 |
136 |
1.85 |
6.62 |
73.835 |
6.968 |
T P |
1jro_A |
450 |
165 |
135 |
1.86 |
12.59 |
71.906 |
6.892 |
T P |
2w3s_A |
450 |
165 |
137 |
1.99 |
12.41 |
71.393 |
6.556 |
T P |
1zxi_C |
287 |
165 |
137 |
1.96 |
5.84 |
70.218 |
6.642 |
T P |
1qj2_C |
285 |
165 |
135 |
1.94 |
5.93 |
69.651 |
6.620 |
T P |
1t3q_C |
285 |
165 |
132 |
1.87 |
7.58 |
69.152 |
6.699 |
T P |
1n62_C |
286 |
165 |
135 |
1.97 |
5.93 |
67.860 |
6.514 |
T P |
1rm6_B |
323 |
165 |
136 |
2.05 |
11.76 |
65.931 |
6.328 |
T P |
3e9m_A |
321 |
165 |
46 |
2.81 |
6.52 |
17.760 |
1.580 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]