LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_64.5wLII_10961_20
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ys7_B
226
220
176
0.84
15.34
78.911
18.633
T P
2gwr_A
225
220
135
2.08
18.52
50.089
6.194
T P
2oqr_A
226
220
105
1.80
18.10
43.979
5.533
T P
2d1v_A
103
220
94
1.51
14.89
41.246
5.852
T P
1gxq_A
105
220
95
1.64
18.95
40.780
5.460
T P
2z9m_A
100
220
92
1.55
13.04
40.038
5.567
T P
2hwv_A
101
220
93
1.66
15.05
39.779
5.275
T P
2pmu_B
103
220
95
1.78
13.68
39.707
5.054
T P
1kgs_A
219
220
92
1.51
14.13
39.569
5.714
T P
1p2f_A
217
220
90
1.72
17.78
38.505
4.958
T P
1qqi_A
104
220
91
1.64
19.78
38.341
5.240
T P
1odd_A
100
220
86
1.88
18.60
35.327
4.354
T P
1opc_A
99
220
83
1.72
19.28
34.946
4.557
T P
1w25_A
454
220
85
2.13
20.00
32.377
3.812
T P
1zes_A
121
220
74
1.77
20.27
31.039
3.956
T P
2eub_A
121
220
72
1.79
15.28
30.098
3.801
T P
1zh2_A
120
220
71
1.78
19.72
29.944
3.769
T P
1xhe_B
122
220
70
1.66
18.57
29.735
3.975
T P
2hqn_A
109
220
88
2.12
14.77
29.521
3.962
T P
1xhf_B
122
220
70
1.71
17.14
29.287
3.871
T P
2hqr_A
223
220
87
2.15
12.64
29.236
3.861
T P
2a9o_A
117
220
68
1.65
19.12
29.021
3.881
T P
1mvo_A
121
220
67
1.59
17.91
28.923
3.964
T P
1b00_A
122
220
72
1.97
18.06
28.850
3.472
T P
2a9r_A
117
220
67
1.61
19.40
28.742
3.920
T P
2jpb_A
104
220
75
1.99
18.67
28.427
3.595
T P
2iyn_B
124
220
75
2.07
17.33
26.410
3.453
T P
2jb9_B
122
220
71
1.95
15.49
25.388
3.457
T P
2jba_A
125
220
70
1.87
15.71
25.355
3.561
T P
2jba_B
121
220
69
1.99
15.94
24.635
3.306
T P
1h6k_C
733
220
72
2.55
8.33
22.017
2.719
T P
1lrz_A
400
220
50
2.49
2.00
16.412
1.931
T P
1bg1_A
559
220
55
2.64
1.82
15.911
2.011
T P
2h94_A
647
220
54
2.73
1.85
15.820
1.905
T P
2hko_A
647
220
50
2.61
8.00
15.617
1.845
T P
2z3y_A
643
220
51
2.71
9.80
15.232
1.816
T P
1ha0_A
494
220
54
2.74
1.85
15.215
1.904
T P
2dw4_A
634
220
53
2.81
7.55
15.020
1.824
T P
1y1u_A
544
220
49
2.66
4.08
14.896
1.779
T P
2v1d_A
666
220
49
2.70
10.20
14.853
1.749
T P
3cwg_B
507
220
48
2.76
6.25
14.606
1.677
T P
2iw5_A
666
220
48
2.90
10.42
14.042
1.599
T P
1f5n_A
570
220
45
2.79
15.56
13.069
1.557
T P
1qvr_A
803
220
39
2.92
2.56
12.134
1.290
T P
1jch_A
468
220
38
2.88
5.26
11.821
1.274
T P
2ve7_B
303
220
35
2.44
2.86
11.376
1.380
T P
2jz6_A
77
220
36
2.59
2.78
10.808
1.341
T P
2b9c_B
142
220
28
2.00
7.14
10.622
1.331
T P
2fxo_A
129
220
29
2.28
0.00
10.536
1.220
T P
2fxm_A
126
220
28
2.09
0.00
10.439
1.281
T P
1c1g_A
284
220
30
2.37
3.33
10.182
1.214
T P
2j01_1
88
220
28
2.44
3.57
9.212
1.102
T P
2b5u_A
470
220
31
2.97
3.23
9.129
1.011
T P
2qam_Z
77
220
27
2.55
0.00
8.807
1.019
T P
2i2t_X
77
220
30
2.64
3.33
8.802
1.095
T P
2jl6_1
87
220
28
2.85
10.71
8.526
0.950
T P
3bbo_Y
76
220
26
2.64
0.00
7.490
0.948
T P
3f1f_1
88
220
21
2.65
9.52
7.252
0.763
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]