LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_66.5wLII_10961_25
Total number of 3D structures: 76
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1hfe_L
396
275
221
0.78
23.08
79.604
24.972
T P
3c8y_A
574
275
214
1.65
18.22
71.699
12.251
T P
1e08_A
371
275
206
2.18
22.82
51.377
9.032
T P
1jnr_B
149
275
65
1.92
18.46
21.264
3.213
T P
2fug_3
737
275
84
2.45
11.90
21.255
3.292
T P
2v4j_B
380
275
70
2.15
17.14
20.442
3.111
T P
3c7b_B
363
275
69
2.12
14.49
20.319
3.103
T P
2fgo_A
81
275
60
1.65
20.00
20.305
3.426
T P
1jb0_C
80
275
59
1.75
27.12
20.046
3.196
T P
2vkr_A
103
275
57
1.68
21.05
19.807
3.208
T P
1blu_A
80
275
61
1.81
18.03
19.789
3.197
T P
1xer_A
102
275
57
1.68
21.05
19.694
3.198
T P
1a6l_A
106
275
56
1.64
17.86
19.424
3.221
T P
1ftc_A
106
275
56
1.66
17.86
19.351
3.180
T P
1b0v_A
106
275
56
1.76
19.64
19.136
3.007
T P
2fd2_A
106
275
56
1.73
17.86
19.131
3.062
T P
1g6b_A
106
275
56
1.77
17.86
19.115
3.001
T P
1frk_A
106
275
56
1.76
17.86
19.086
3.008
T P
2fug_9
154
275
57
1.80
21.05
19.034
3.005
T P
1h98_A
77
275
55
1.69
16.36
18.944
3.078
T P
2z8q_A
66
275
54
1.77
22.22
18.549
2.890
T P
1fca_A
55
275
54
1.57
24.07
18.405
3.229
T P
2fdn_A
55
275
54
1.56
25.93
18.340
3.263
T P
1dur_A
55
275
53
1.37
20.75
18.282
3.594
T P
1fdx
54
275
52
1.27
23.08
17.935
3.794
T P
1bc6_A
77
275
53
1.84
18.87
17.888
2.727
T P
1bqx_A
77
275
54
1.87
20.37
17.784
2.741
T P
2iv2_X
696
275
74
2.59
6.76
17.441
2.750
T P
1clf_A
55
275
50
1.70
24.00
16.745
2.785
T P
2vpz_A
734
275
67
2.56
5.97
16.479
2.516
T P
1yqt_A
515
275
71
2.83
5.63
16.136
2.421
T P
2v3v_A
721
275
62
2.57
8.06
16.133
2.321
T P
1h0h_A
976
275
67
2.53
7.46
16.063
2.547
T P
3cf4_A
766
275
69
2.94
10.14
15.876
2.269
T P
1k0t_A
80
275
55
2.28
16.36
15.516
2.314
T P
1h7x_B
1019
275
66
2.73
4.55
15.504
2.328
T P
1jfl_A
228
275
66
2.74
3.03
15.228
2.324
T P
1gte_D
1014
275
67
2.82
4.48
14.828
2.291
T P
2nap_A
720
275
65
2.72
4.62
14.811
2.301
T P
2dx7_A
228
275
57
2.73
1.75
14.333
2.014
T P
1xdw_A
331
275
56
2.57
3.57
14.297
2.095
T P
2h88_B
239
275
65
2.74
7.69
14.113
2.287
T P
1zoy_B
239
275
62
2.62
6.45
14.111
2.282
T P
3bk7_A
593
275
62
2.94
4.84
14.099
2.042
T P
2o01_C
80
275
55
2.32
18.18
13.808
2.269
T P
1kqf_A
981
275
55
2.79
7.27
13.415
1.904
T P
2nx9_B
453
275
58
2.76
12.07
13.335
2.025
T P
1q16_B
509
275
56
2.72
1.79
13.287
1.983
T P
1kqf_B
289
275
43
2.17
18.60
13.173
1.896
T P
2vpz_B
193
275
38
1.61
15.79
12.529
2.217
T P
1y4z_B
509
275
53
2.82
7.55
12.472
1.812
T P
1fdd_A
106
275
38
2.09
15.79
11.870
1.736
T P
1frh_A
106
275
39
2.19
20.51
11.864
1.703
T P
1pc4_A
106
275
41
2.34
12.20
11.805
1.682
T P
2c3m_A
1231
275
49
2.73
4.08
11.773
1.729
T P
1f5c_A
106
275
39
2.37
17.95
11.766
1.580
T P
1f5b_A
106
275
37
2.01
18.92
11.686
1.751
T P
1pc5_A
106
275
37
1.96
13.51
11.657
1.799
T P
1d3w_A
106
275
38
2.19
18.42
11.634
1.657
T P
1b0t_A
106
275
37
1.84
16.22
11.601
1.911
T P
1frl_A
106
275
38
2.21
18.42
11.599
1.644
T P
1frj_A
106
275
40
2.26
15.00
11.598
1.695
T P
1fri_A
106
275
39
1.92
15.38
11.553
1.931
T P
1g3o_A
106
275
38
2.18
18.42
11.543
1.665
T P
1gao_A
106
275
38
2.19
15.79
11.538
1.661
T P
2c42_A
1231
275
44
2.58
2.27
11.495
1.641
T P
7fd1_A
106
275
37
2.32
18.92
11.484
1.526
T P
2bs2_B
239
275
49
2.56
10.20
11.419
1.841
T P
1fd2_A
106
275
39
1.91
15.38
11.409
1.940
T P
1frx_A
106
275
38
1.81
15.79
11.328
1.993
T P
2ivf_B
337
275
47
2.67
0.00
11.250
1.696
T P
1ff2_A
106
275
39
2.03
12.82
11.231
1.829
T P
2bs3_B
239
275
46
2.66
6.52
11.225
1.670
T P
1frm_A
106
275
36
1.89
16.67
11.181
1.807
T P
1kf6_B
243
275
46
2.88
4.35
11.053
1.543
T P
1nek_B
238
275
40
2.73
12.50
10.011
1.415
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]