LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_68.5wLII_10961_32
Total number of 3D structures: 71
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1qvr_A
803
388
260
1.64
20.00
63.264
14.947
T P
1r6b_X
704
388
221
1.97
17.65
49.480
10.664
T P
1ofh_A
309
388
180
2.32
13.89
32.005
7.428
T P
1ixs_B
315
388
169
2.20
10.65
31.988
7.347
T P
1doo_E
393
388
177
2.19
15.82
31.836
7.745
T P
1um8_A
327
388
180
2.27
13.89
31.650
7.592
T P
1j7k_A
299
388
163
2.13
11.04
31.289
7.324
T P
1im2_A
346
388
173
2.15
13.29
31.232
7.679
T P
1e94_F
408
388
171
2.14
16.37
31.216
7.639
T P
1in7_A
298
388
161
2.19
11.18
30.964
7.025
T P
1g4a_E
356
388
169
2.13
14.20
30.824
7.579
T P
1g41_A
334
388
169
2.10
14.20
30.648
7.692
T P
1in5_A
301
388
161
2.14
11.18
29.339
7.172
T P
2c9o_A
398
388
153
2.22
11.76
29.326
6.582
T P
1in6_A
300
388
161
2.18
10.56
29.263
7.068
T P
3d8b_A
281
388
163
2.16
14.11
29.229
7.200
T P
1in4_A
298
388
158
2.19
11.39
29.077
6.907
T P
1in8_A
298
388
156
2.11
11.54
28.751
7.048
T P
1ixr_C
308
388
170
2.23
11.18
28.716
7.293
T P
3eie_A
303
388
156
2.27
10.26
27.682
6.592
T P
2qz4_A
223
388
153
2.24
7.84
27.449
6.543
T P
2dhr_A
458
388
158
2.25
11.39
27.409
6.710
T P
2chg_A
223
388
150
2.09
12.00
27.152
6.836
T P
1s3s_F
441
388
160
2.27
11.88
27.091
6.753
T P
1iy2_A
245
388
150
2.25
11.33
26.878
6.395
T P
1iqp_A
326
388
147
2.12
11.56
26.629
6.636
T P
3dzd_A
368
388
157
2.46
15.92
26.354
6.141
T P
2chq_A
313
388
154
2.30
12.34
26.224
6.426
T P
1hqc_A
314
388
155
2.49
9.03
26.178
5.976
T P
3b9p_A
268
388
143
2.19
11.19
26.049
6.241
T P
3cf0_A
281
388
158
2.39
12.03
25.810
6.346
T P
1yqi_C
708
388
157
2.37
11.46
25.775
6.344
T P
3cf2_A
659
388
154
2.40
12.99
25.584
6.169
T P
2c9c_A
244
388
154
2.42
15.58
25.552
6.115
T P
1r7r_A
683
388
153
2.36
11.11
25.521
6.223
T P
2r44_A
330
388
143
2.22
15.38
25.358
6.159
T P
3eih_A
319
388
145
2.20
11.72
25.069
6.293
T P
1ypw_A
692
388
145
2.29
12.41
24.987
6.061
T P
1xwi_A
322
388
146
2.27
9.59
24.868
6.157
T P
1g8p_A
321
388
142
2.15
13.38
24.822
6.319
T P
2bjw_A
242
388
149
2.42
16.78
24.787
5.902
T P
2zan_A
312
388
146
2.41
10.27
24.745
5.818
T P
2vii_A
247
388
153
2.45
18.30
24.696
6.010
T P
2bjv_A
236
388
144
2.34
18.75
24.579
5.903
T P
1sxj_D
328
388
140
2.22
14.29
24.525
6.047
T P
1ixz_A
238
388
134
2.21
11.94
24.317
5.812
T P
2ce7_C
421
388
142
2.33
14.08
24.298
5.850
T P
1jr3_A
366
388
146
2.35
10.27
24.297
5.957
T P
2qp9_X
288
388
145
2.27
11.03
24.270
6.110
T P
1xxi_C
366
388
146
2.39
10.96
24.179
5.872
T P
2r62_A
249
388
142
2.38
10.56
24.064
5.722
T P
2rko_A
280
388
143
2.44
11.89
23.861
5.629
T P
1njg_A
240
388
142
2.48
11.97
23.580
5.506
T P
1sxj_C
322
388
134
2.24
11.19
23.491
5.730
T P
3f8t_A
459
388
132
2.21
11.36
23.249
5.707
T P
1sxj_B
316
388
136
2.22
11.03
23.247
5.850
T P
1lv7_A
251
388
135
2.45
10.37
22.350
5.303
T P
1d2n_A
246
388
122
2.38
13.93
21.171
4.923
T P
3f9v_A
595
388
130
2.48
7.69
21.165
5.040
T P
1qzm_A
94
388
69
2.31
7.25
11.892
2.867
T P
1x37_A
95
388
63
2.43
3.17
11.248
2.495
T P
2qjw_A
176
388
61
2.65
4.92
9.686
2.220
T P
3fh2_A
146
388
48
2.58
8.33
8.505
1.794
T P
1khy_D
140
388
43
2.76
2.33
7.827
1.503
T P
1xhk_B
187
388
38
2.56
7.89
7.105
1.427
T P
1z0e_A
195
388
40
2.80
17.50
6.761
1.380
T P
1rre_E
191
388
39
2.52
5.13
6.730
1.489
T P
1z0b_A
203
388
34
2.87
0.00
6.003
1.145
T P
1z0c_A
200
388
33
2.67
12.12
5.672
1.192
T P
1z0w_A
203
388
27
2.48
0.00
5.429
1.048
T P
1rr9_E
191
388
24
2.11
0.00
4.997
1.088
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]