LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_73.5wLII_10961_49
Total number of 3D structures: 62
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ouv_A
265
258
256
0.35
21.88
99.291
57.437
T P
1klx_A
133
258
110
1.45
19.09
40.741
7.082
T P
2fi7_A
223
258
126
2.42
15.87
34.457
4.999
T P
1e96_B
185
258
112
2.11
11.61
34.286
5.062
T P
1hh8_A
192
258
109
2.19
10.09
33.111
4.752
T P
2ho1_A
222
258
113
2.39
11.50
32.550
4.531
T P
1wm5_A
205
258
108
2.18
8.33
31.986
4.727
T P
1w3b_A
388
258
128
2.70
10.94
30.719
4.570
T P
1fch_A
302
258
96
2.13
8.33
30.663
4.308
T P
1qqe_A
281
258
105
2.30
11.43
30.189
4.380
T P
1wao_1
471
258
97
2.16
11.34
30.027
4.287
T P
2fo7_A
136
258
100
2.36
24.00
29.781
4.069
T P
3cvq_A
289
258
96
2.17
12.50
29.751
4.225
T P
1elw_A
117
258
94
2.18
10.64
29.569
4.117
T P
1xnf_B
262
258
102
2.32
10.78
29.507
4.221
T P
2gw1_A
487
258
117
2.60
8.55
29.342
4.329
T P
2vsy_A
547
258
110
2.62
10.91
29.182
4.039
T P
2vsn_A
534
258
103
2.49
14.56
28.808
3.984
T P
1na0_A
119
258
90
2.19
22.22
28.770
3.937
T P
1a17_A
159
258
91
2.23
9.89
28.729
3.903
T P
2vq2_A
220
258
104
2.47
12.50
28.538
4.045
T P
2bug_A
131
258
96
2.27
7.29
28.419
4.056
T P
3cv0_A
300
258
93
2.43
13.98
28.262
3.682
T P
2dba_A
148
258
95
2.15
15.79
27.799
4.220
T P
1elr_A
128
258
88
2.26
10.23
27.294
3.724
T P
2fbn_A
153
258
86
2.10
13.95
27.221
3.912
T P
2vyi_A
128
258
88
2.21
14.77
26.653
3.817
T P
1na3_A
86
258
77
1.91
28.57
26.563
3.825
T P
2c0l_A
292
258
89
2.33
15.73
26.304
3.661
T P
3edt_B
258
258
93
2.41
13.98
26.141
3.709
T P
2pl2_A
194
258
92
2.29
10.87
26.070
3.855
T P
2if4_A
258
258
89
2.32
8.99
25.829
3.685
T P
2c2l_A
281
258
92
2.61
19.57
25.297
3.398
T P
2q7f_A
194
258
97
2.59
15.46
24.232
3.601
T P
2avp_A
68
258
64
1.86
31.25
22.530
3.273
T P
2c0m_C
302
258
85
2.61
5.88
21.412
3.140
T P
2j9q_A
300
258
87
2.77
9.20
20.995
3.034
T P
1kt1_A
374
258
82
2.65
7.32
19.936
2.978
T P
3ceq_B
269
258
76
2.56
17.11
19.812
2.856
T P
1ihg_A
364
258
73
2.65
6.85
19.283
2.656
T P
1p5q_A
283
258
79
2.72
5.06
19.230
2.798
T P
1kt0_A
357
258
76
2.65
6.58
19.193
2.760
T P
1qz2_A
285
258
76
2.73
7.89
19.113
2.683
T P
1n11_A
404
258
72
2.79
4.17
19.076
2.493
T P
3b7b_A
236
258
72
2.73
5.56
18.215
2.543
T P
1wdy_A
285
258
58
2.86
6.90
15.608
1.961
T P
1uoh_A
223
258
58
2.73
6.90
15.403
2.052
T P
2wb7_A
525
258
54
2.53
7.41
14.990
2.055
T P
2bkk_D
156
258
59
2.71
8.47
14.706
2.099
T P
2p2c_P
158
258
63
2.71
7.94
14.694
2.241
T P
2j8s_D
156
258
53
2.52
3.77
14.525
2.024
T P
1n0r_A
126
258
55
2.68
10.91
14.028
1.981
T P
1svx_A
157
258
54
2.78
7.41
13.948
1.876
T P
1mj0_A
156
258
55
2.77
10.91
13.596
1.914
T P
2dvw_A
229
258
51
2.54
7.84
13.414
1.933
T P
2qyj_A
154
258
49
2.77
10.20
12.465
1.709
T P
2bkg_A
154
258
52
2.87
5.77
12.180
1.752
T P
1qym_A
223
258
46
2.79
10.87
12.100
1.594
T P
2v5q_C
130
258
45
2.59
13.33
11.988
1.673
T P
3eo3_A
288
258
49
2.93
4.08
11.852
1.617
T P
2jab_C
125
258
46
2.92
10.87
11.849
1.524
T P
1n0q_B
93
258
46
2.91
6.52
10.648
1.526
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]