LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_77.5wLII_11067_14
Total number of 3D structures: 51
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2geb_A
184
125
120
1.36
13.33
91.021
8.245
T P
1yfz_A
178
125
120
1.38
13.33
90.926
8.135
T P
1g9s_A
169
125
119
1.36
15.13
90.712
8.168
T P
1p18_B
194
125
121
1.59
9.92
90.614
7.150
T P
1j7j_B
164
125
118
1.28
15.25
90.330
8.526
T P
1i13_B
193
125
121
1.69
9.09
90.277
6.765
T P
1i0i_B
194
125
121
1.61
8.26
90.186
7.062
T P
1i0l_B
194
125
120
1.67
9.17
89.618
6.786
T P
1tc2_B
196
125
120
1.67
10.00
89.435
6.798
T P
1i14_B
194
125
120
1.68
9.17
89.154
6.742
T P
1tc1_B
186
125
116
1.49
10.34
88.839
7.275
T P
2ywu_A
164
125
116
1.42
12.07
88.389
7.655
T P
1hgx_A
164
125
115
1.39
13.04
87.853
7.739
T P
1fsg_A
233
125
119
1.78
7.56
87.333
6.340
T P
1d6n_A
214
125
117
1.84
12.82
86.302
6.039
T P
1pzm_A
170
125
113
1.48
8.85
85.611
7.151
T P
2jbh_B
213
125
112
1.56
8.93
84.372
6.741
T P
1dbr_A
227
125
112
1.72
9.82
83.372
6.147
T P
1qk5_B
217
125
111
1.53
8.11
82.811
6.829
T P
2vfa_B
205
125
110
1.69
13.64
82.040
6.151
T P
1cjb_C
230
125
116
1.86
10.34
80.098
5.925
T P
1z7g_C
204
125
112
1.89
13.39
79.534
5.635
T P
1vdm_G
152
125
112
1.97
13.39
77.440
5.404
T P
2igb_B
173
125
117
1.94
8.55
77.382
5.738
T P
1a3c_A
166
125
116
2.01
9.48
72.304
5.486
T P
1ufr_A
167
125
113
2.07
8.85
70.849
5.218
T P
1i5e_A
208
125
108
2.19
4.63
64.134
4.714
T P
2dy0_A
182
125
111
2.23
8.11
63.789
4.772
T P
2h08_B
308
125
98
2.18
4.08
62.653
4.298
T P
1dku_A
295
125
105
2.20
5.71
62.497
4.557
T P
2h06_B
308
125
99
2.15
4.04
60.797
4.409
T P
2h07_B
308
125
101
2.22
4.95
60.341
4.360
T P
1ecf_B
500
125
96
2.06
7.29
58.516
4.449
T P
1zn8_B
179
125
99
2.15
9.09
57.834
4.397
T P
1ao0_A
455
125
90
1.99
7.78
55.736
4.298
T P
1gph_1
465
125
89
1.92
6.74
55.711
4.404
T P
3dah_C
300
125
93
2.25
8.60
55.594
3.961
T P
1lrz_A
400
125
56
2.34
5.36
31.928
2.299
T P
2hko_A
647
125
48
2.50
6.25
26.365
1.847
T P
1wgz_A
510
125
43
2.24
6.98
25.929
1.836
T P
3dwc_B
504
125
39
2.27
7.69
24.386
1.645
T P
2h94_A
647
125
42
2.76
2.38
22.157
1.469
T P
1bg1_A
559
125
36
2.34
5.56
21.273
1.474
T P
1r62_A
136
125
35
2.14
8.57
21.138
1.563
T P
2z3y_A
643
125
40
2.60
17.50
20.473
1.480
T P
2iw5_A
666
125
37
2.75
16.22
20.034
1.297
T P
2dw4_A
634
125
40
2.82
12.50
19.921
1.370
T P
2v1d_A
666
125
38
2.69
2.63
19.673
1.364
T P
3cwg_B
507
125
35
2.75
5.71
18.533
1.229
T P
1ka2_A
497
125
33
2.96
3.03
17.831
1.080
T P
2e57_A
606
125
12
2.24
0.00
7.822
0.513
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]