LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_79.5wLII_11067_27
Total number of 3D structures: 127
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1tv8_A
327
291
265
1.01
19.25
88.660
23.971
T P
2fb2_A
327
291
265
1.05
19.25
88.509
23.026
T P
3ciw_A
346
291
160
2.16
7.50
42.048
7.069
T P
3cix_A
346
291
160
2.16
7.50
41.926
7.075
T P
3can_A
161
291
137
1.93
13.87
40.232
6.746
T P
2a5h_B
410
291
148
2.01
11.49
40.100
7.020
T P
3c8f_A
245
291
150
1.95
11.33
40.017
7.308
T P
2z2u_A
279
291
136
2.02
16.18
39.333
6.406
T P
2yx0_A
324
291
148
2.04
18.24
38.152
6.918
T P
1r30_B
313
291
143
2.27
11.89
35.443
6.028
T P
2qgq_A
272
291
115
2.48
10.43
26.655
4.466
T P
1x1o_A
277
291
82
2.59
3.66
18.350
3.051
T P
1fc9_A
386
291
77
2.27
3.90
18.268
3.242
T P
1jxm_A
264
291
68
2.63
8.82
14.826
2.494
T P
1qha_A
903
291
66
2.78
12.12
14.800
2.291
T P
2b0t_A
735
291
67
2.74
2.99
14.796
2.362
T P
1ecx_B
365
291
65
2.45
12.31
14.513
2.548
T P
1kjw_A
292
291
66
2.80
7.58
14.065
2.275
T P
1bg3_A
902
291
60
2.73
13.33
13.924
2.120
T P
1cza_N
898
291
61
2.85
1.64
13.712
2.069
T P
1dgk_N
898
291
55
2.89
7.27
12.827
1.841
T P
1fc6_A
386
291
58
2.95
1.72
12.533
1.900
T P
1eg5_B
365
291
54
2.71
9.26
11.715
1.920
T P
1ky9_B
396
291
49
2.58
4.08
11.699
1.827
T P
3cs0_A
392
291
54
2.76
7.41
11.665
1.886
T P
1soz_A
281
291
51
2.64
5.88
11.546
1.863
T P
1lcy_A
296
291
50
2.62
6.00
11.472
1.841
T P
1hkb_A
899
291
46
2.87
10.87
10.143
1.549
T P
2ytw_A
118
291
39
2.58
5.13
9.866
1.453
T P
2qt5_A
194
291
44
2.83
6.82
9.783
1.503
T P
2pzd_A
106
291
39
2.35
12.82
9.727
1.593
T P
1itw_A
740
291
40
2.61
5.00
9.447
1.475
T P
1sot_B
294
291
41
2.68
7.32
9.294
1.477
T P
1p1d_A
196
291
41
2.64
9.76
9.199
1.498
T P
2zpl_B
94
291
37
2.28
8.11
9.180
1.556
T P
1d5g_A
96
291
41
2.75
2.44
9.170
1.440
T P
1n99_B
163
291
40
2.68
5.00
9.007
1.440
T P
2ozf_A
92
291
38
2.50
10.53
8.991
1.463
T P
1z87_A
263
291
40
2.80
10.00
8.912
1.380
T P
1tp5_A
115
291
42
2.77
7.14
8.884
1.465
T P
2jin_A
102
291
41
2.69
4.88
8.847
1.468
T P
1ozi_A
99
291
39
2.75
7.69
8.791
1.370
T P
2eno_A
120
291
40
2.75
7.50
8.788
1.403
T P
1uju_A
111
291
39
2.59
5.13
8.725
1.448
T P
1p1e_A
101
291
39
2.77
7.69
8.697
1.360
T P
2eej_A
96
291
38
2.59
5.26
8.693
1.415
T P
2byg_A
98
291
38
2.46
7.89
8.609
1.482
T P
2dc2_A
87
291
32
2.30
6.25
8.605
1.333
T P
1v5q_A
122
291
35
2.44
2.86
8.544
1.378
T P
1n7e_A
95
291
34
2.38
8.82
8.478
1.370
T P
1w9e_A
164
291
38
3.06
2.63
8.462
1.203
T P
2eaq_A
89
291
34
2.37
11.76
8.430
1.374
T P
2joa_A
105
291
36
2.41
11.11
8.424
1.436
T P
1uez_A
101
291
34
2.29
11.76
8.400
1.422
T P
1vb7_A
94
291
34
2.44
8.82
8.314
1.341
T P
1b8q_A
127
291
36
3.00
5.56
8.310
1.161
T P
2p3w_A
110
291
28
2.00
10.71
8.254
1.332
T P
2edz_A
114
291
37
2.93
8.11
8.250
1.220
T P
1be9_A
115
291
35
2.41
8.57
8.247
1.394
T P
1qav_B
115
291
34
2.35
14.71
8.246
1.386
T P
2fe5_A
94
291
36
2.50
5.56
8.229
1.383
T P
1te0_A
318
291
36
2.72
5.56
8.227
1.277
T P
2fne_C
104
291
36
2.53
8.33
8.227
1.368
T P
1gq4_A
90
291
36
2.63
5.56
8.167
1.320
T P
1uf1_A
128
291
34
2.62
11.76
8.157
1.250
T P
1whd_A
100
291
36
2.42
5.56
8.128
1.430
T P
2omj_A
89
291
34
2.57
5.88
8.019
1.272
T P
1qav_A
90
291
33
2.46
9.09
8.014
1.289
T P
1iu0_A
91
291
36
2.70
11.11
7.956
1.287
T P
1wha_A
105
291
35
2.80
11.43
7.904
1.209
T P
2eeh_A
100
291
36
2.83
8.33
7.858
1.228
T P
2g2l_A
90
291
32
2.65
6.25
7.858
1.164
T P
2hga_A
103
291
35
2.65
8.57
7.852
1.273
T P
1wi2_A
104
291
31
2.49
9.68
7.848
1.195
T P
2dkr_A
93
291
36
2.76
11.11
7.839
1.259
T P
2awx_A
92
291
32
2.50
6.25
7.839
1.229
T P
2yuy_A
126
291
34
2.63
11.76
7.831
1.244
T P
1rgr_A
93
291
32
2.37
9.38
7.826
1.298
T P
2he2_A
102
291
35
2.65
5.71
7.789
1.271
T P
1gm1_A
94
291
36
2.68
2.78
7.784
1.296
T P
2pdz_A
86
291
32
2.39
9.38
7.755
1.283
T P
2qbw_A
189
291
35
2.70
5.71
7.749
1.251
T P
2he4_A
90
291
31
2.61
3.23
7.747
1.143
T P
1qau_A
112
291
32
2.33
15.62
7.740
1.319
T P
1i92_A
91
291
32
2.92
0.00
7.732
1.058
T P
1qlc_A
95
291
33
2.63
3.03
7.689
1.208
T P
2pkt_A
91
291
31
2.39
0.00
7.648
1.243
T P
2iwq_A
92
291
34
2.54
8.82
7.613
1.286
T P
2egk_B
90
291
29
2.45
3.45
7.600
1.138
T P
2f5y_A
82
291
32
2.58
3.12
7.543
1.195
T P
2vrf_A
95
291
34
2.62
8.82
7.533
1.250
T P
1wh1_A
124
291
34
2.89
2.94
7.532
1.139
T P
1kef_A
93
291
32
2.67
6.25
7.456
1.154
T P
1x5r_A
112
291
29
2.75
10.34
7.433
1.018
T P
1q7x_A
108
291
31
2.66
3.23
7.385
1.125
T P
1ihj_B
95
291
29
2.70
10.34
7.373
1.035
T P
2vz5_A
111
291
30
2.45
3.33
7.358
1.176
T P
2awu_A
95
291
32
2.65
6.25
7.347
1.163
T P
3dj3_B
101
291
32
2.74
9.38
7.338
1.128
T P
2w4f_A
95
291
31
2.58
3.23
7.293
1.155
T P
1uew_A
114
291
30
2.55
6.67
7.212
1.134
T P
1x5n_A
114
291
29
2.59
6.90
7.181
1.080
T P
2ocs_A
85
291
28
2.39
7.14
7.159
1.124
T P
2oqs_A
92
291
30
2.47
6.67
7.109
1.168
T P
2jil_B
97
291
30
2.62
6.67
7.059
1.103
T P
1v5l_A
103
291
31
2.98
3.23
6.864
1.007
T P
2dlu_A
111
291
31
2.96
0.00
6.838
1.012
T P
1uhp_A
107
291
27
2.39
3.70
6.810
1.085
T P
1z86_A
87
291
28
2.68
10.71
6.732
1.007
T P
2d90_A
102
291
27
2.36
11.11
6.551
1.096
T P
2vsp_A
83
291
28
2.80
0.00
6.447
0.965
T P
3dj1_A
115
291
28
2.59
10.71
6.381
1.040
T P
1u3b_A
185
291
28
2.79
3.57
6.292
0.969
T P
2yt8_A
94
291
27
2.73
3.70
6.240
0.955
T P
1gq5_A
91
291
26
2.62
3.85
6.222
0.956
T P
2v90_A
95
291
24
2.77
12.50
6.065
0.835
T P
1uit_A
117
291
25
2.50
0.00
5.999
0.960
T P
1vj6_A
95
291
25
2.55
8.00
5.974
0.945
T P
1um7_A
113
291
27
2.80
7.41
5.774
0.930
T P
2ego_B
90
291
24
2.58
4.17
5.604
0.897
T P
1g9o_A
91
291
24
2.69
4.17
5.579
0.860
T P
1x5q_A
110
291
23
2.74
4.35
5.291
0.809
T P
2fcf_A
89
291
19
2.57
10.53
5.070
0.712
T P
2dls_A
93
291
21
2.51
0.00
5.027
0.805
T P
2dmz_A
129
291
20
2.64
0.00
4.962
0.730
T P
2zpm_A
86
291
18
2.67
0.00
4.671
0.651
T P
2i0l_A
83
291
18
2.80
5.56
4.019
0.621
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]