LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_80.5wLII_11067_29
Total number of 3D structures: 75
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1w3b_A
388
364
324
1.48
16.05
83.227
20.471
T P
2vq2_A
220
364
195
1.88
11.79
47.039
9.836
T P
2ho1_A
222
364
185
1.94
5.41
44.946
9.087
T P
2pl2_A
194
364
169
1.72
13.61
42.414
9.286
T P
2fi7_A
223
364
176
2.17
12.50
39.688
7.739
T P
2gw1_A
487
364
172
2.03
10.47
37.540
8.062
T P
1xnf_B
262
364
162
1.98
11.11
37.525
7.791
T P
2fo7_A
136
364
136
1.24
17.65
35.475
10.186
T P
2q7f_A
194
364
166
2.24
6.63
34.518
7.087
T P
2vsy_A
547
364
153
2.26
9.80
33.197
6.483
T P
2vsn_A
534
364
145
2.08
10.34
32.215
6.651
T P
2c2l_A
281
364
123
1.49
5.69
32.193
7.750
T P
1wao_1
471
364
128
1.71
13.28
32.161
7.082
T P
2c0l_A
292
364
152
2.31
7.24
31.870
6.306
T P
1ihg_A
364
364
121
1.49
6.61
31.662
7.602
T P
1qz2_A
285
364
119
1.20
10.92
31.640
9.133
T P
2c0m_C
302
364
158
2.33
7.59
31.533
6.508
T P
1p5q_A
283
364
119
1.27
10.92
31.516
8.658
T P
1fch_A
302
364
145
2.21
9.66
31.367
6.267
T P
2vyi_A
128
364
119
1.20
10.08
31.236
9.171
T P
1kt1_A
374
364
119
1.30
10.08
31.023
8.526
T P
2j9q_A
300
364
157
2.35
8.28
31.020
6.397
T P
2dba_A
148
364
121
1.53
7.44
30.985
7.415
T P
2fbn_A
153
364
117
1.33
11.11
30.460
8.201
T P
1na0_A
119
364
118
1.36
16.95
30.456
8.070
T P
1a17_A
159
364
119
1.58
9.24
30.452
7.063
T P
3edt_B
258
364
150
2.28
17.33
30.369
6.313
T P
3cv0_A
300
364
148
2.41
10.14
30.276
5.893
T P
2bug_A
131
364
119
1.53
10.92
30.180
7.291
T P
1kt0_A
357
364
114
1.23
10.53
30.027
8.556
T P
3ceq_B
269
364
145
2.22
17.24
29.990
6.249
T P
3cvq_A
289
364
150
2.37
10.00
29.908
6.063
T P
1elw_A
117
364
116
1.72
13.79
29.456
6.371
T P
1elr_A
128
364
115
1.74
7.83
28.557
6.251
T P
1na3_A
86
364
85
1.11
17.65
22.721
7.037
T P
1ouv_A
265
364
128
2.68
8.59
22.033
4.609
T P
2if4_A
258
364
108
2.33
7.41
21.280
4.445
T P
2avp_A
68
364
68
0.81
17.65
18.473
7.473
T P
2c2a_A
240
364
55
2.44
5.45
11.035
2.168
T P
2r78_C
116
364
43
2.32
6.98
9.103
1.776
T P
1wa9_B
318
364
49
2.82
6.12
8.855
1.676
T P
2v0u_A
146
364
40
2.23
5.00
8.185
1.718
T P
1d06_A
130
364
42
2.45
2.38
7.943
1.649
T P
2cmn_A
117
364
37
2.50
5.41
7.522
1.421
T P
1p97_A
114
364
37
2.38
2.70
7.376
1.490
T P
1y28_A
119
364
35
2.30
8.57
7.237
1.457
T P
1xj3_A
116
364
36
2.46
11.11
7.208
1.405
T P
1lsw_A
117
364
33
2.48
9.09
7.047
1.278
T P
2b02_A
111
364
37
2.61
5.41
6.980
1.364
T P
2pdr_A
147
364
38
2.80
7.89
6.969
1.310
T P
2z6d_A
118
364
36
2.36
2.78
6.963
1.461
T P
1bv6_A
119
364
33
2.44
12.12
6.957
1.302
T P
1byw_A
110
364
33
2.30
6.06
6.923
1.376
T P
2z6c_A
121
364
35
2.53
14.29
6.888
1.330
T P
3eeh_A
116
364
39
2.82
2.56
6.854
1.337
T P
2qkp_A
138
364
34
2.36
8.82
6.843
1.384
T P
2pd8_A
148
364
39
2.87
2.56
6.822
1.315
T P
3bwl_A
125
364
35
2.80
8.57
6.805
1.205
T P
3d72_A
149
364
37
2.71
5.41
6.757
1.318
T P
1v9y_A
103
364
35
2.41
5.71
6.751
1.392
T P
3f1p_A
114
364
37
2.71
5.41
6.740
1.317
T P
2a24_B
108
364
36
2.41
2.78
6.732
1.433
T P
3fg8_A
106
364
38
2.73
13.16
6.665
1.341
T P
1x0o_A
119
364
34
2.54
8.82
6.461
1.286
T P
1s67_L
119
364
36
2.90
5.56
6.373
1.200
T P
2gj3_A
119
364
34
2.86
8.82
6.239
1.148
T P
2vlg_C
102
364
34
2.48
8.82
6.116
1.317
T P
1n9l_A
109
364
32
2.79
3.12
6.113
1.106
T P
2v1b_A
144
364
33
2.65
3.03
6.069
1.200
T P
1jnu_A
104
364
30
2.47
6.67
5.982
1.168
T P
3f1p_B
111
364
37
2.67
5.41
5.979
1.334
T P
3fc7_A
100
364
33
2.63
3.03
5.966
1.209
T P
2vv6_D
107
364
32
2.70
6.25
5.843
1.145
T P
2pr5_A
127
364
32
2.54
9.38
5.664
1.210
T P
2a24_A
107
364
27
2.63
3.70
5.194
0.990
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]