LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_80.5wLII_11067_29
Total number of 3D structures: 75
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
364 |
324 |
1.48 |
16.05 |
83.227 |
20.471 |
T P |
2vq2_A |
220 |
364 |
195 |
1.88 |
11.79 |
47.039 |
9.836 |
T P |
2ho1_A |
222 |
364 |
185 |
1.94 |
5.41 |
44.946 |
9.087 |
T P |
2pl2_A |
194 |
364 |
169 |
1.72 |
13.61 |
42.414 |
9.286 |
T P |
2fi7_A |
223 |
364 |
176 |
2.17 |
12.50 |
39.688 |
7.739 |
T P |
2gw1_A |
487 |
364 |
172 |
2.03 |
10.47 |
37.540 |
8.062 |
T P |
1xnf_B |
262 |
364 |
162 |
1.98 |
11.11 |
37.525 |
7.791 |
T P |
2fo7_A |
136 |
364 |
136 |
1.24 |
17.65 |
35.475 |
10.186 |
T P |
2q7f_A |
194 |
364 |
166 |
2.24 |
6.63 |
34.518 |
7.087 |
T P |
2vsy_A |
547 |
364 |
153 |
2.26 |
9.80 |
33.197 |
6.483 |
T P |
2vsn_A |
534 |
364 |
145 |
2.08 |
10.34 |
32.215 |
6.651 |
T P |
2c2l_A |
281 |
364 |
123 |
1.49 |
5.69 |
32.193 |
7.750 |
T P |
1wao_1 |
471 |
364 |
128 |
1.71 |
13.28 |
32.161 |
7.082 |
T P |
2c0l_A |
292 |
364 |
152 |
2.31 |
7.24 |
31.870 |
6.306 |
T P |
1ihg_A |
364 |
364 |
121 |
1.49 |
6.61 |
31.662 |
7.602 |
T P |
1qz2_A |
285 |
364 |
119 |
1.20 |
10.92 |
31.640 |
9.133 |
T P |
2c0m_C |
302 |
364 |
158 |
2.33 |
7.59 |
31.533 |
6.508 |
T P |
1p5q_A |
283 |
364 |
119 |
1.27 |
10.92 |
31.516 |
8.658 |
T P |
1fch_A |
302 |
364 |
145 |
2.21 |
9.66 |
31.367 |
6.267 |
T P |
2vyi_A |
128 |
364 |
119 |
1.20 |
10.08 |
31.236 |
9.171 |
T P |
1kt1_A |
374 |
364 |
119 |
1.30 |
10.08 |
31.023 |
8.526 |
T P |
2j9q_A |
300 |
364 |
157 |
2.35 |
8.28 |
31.020 |
6.397 |
T P |
2dba_A |
148 |
364 |
121 |
1.53 |
7.44 |
30.985 |
7.415 |
T P |
2fbn_A |
153 |
364 |
117 |
1.33 |
11.11 |
30.460 |
8.201 |
T P |
1na0_A |
119 |
364 |
118 |
1.36 |
16.95 |
30.456 |
8.070 |
T P |
1a17_A |
159 |
364 |
119 |
1.58 |
9.24 |
30.452 |
7.063 |
T P |
3edt_B |
258 |
364 |
150 |
2.28 |
17.33 |
30.369 |
6.313 |
T P |
3cv0_A |
300 |
364 |
148 |
2.41 |
10.14 |
30.276 |
5.893 |
T P |
2bug_A |
131 |
364 |
119 |
1.53 |
10.92 |
30.180 |
7.291 |
T P |
1kt0_A |
357 |
364 |
114 |
1.23 |
10.53 |
30.027 |
8.556 |
T P |
3ceq_B |
269 |
364 |
145 |
2.22 |
17.24 |
29.990 |
6.249 |
T P |
3cvq_A |
289 |
364 |
150 |
2.37 |
10.00 |
29.908 |
6.063 |
T P |
1elw_A |
117 |
364 |
116 |
1.72 |
13.79 |
29.456 |
6.371 |
T P |
1elr_A |
128 |
364 |
115 |
1.74 |
7.83 |
28.557 |
6.251 |
T P |
1na3_A |
86 |
364 |
85 |
1.11 |
17.65 |
22.721 |
7.037 |
T P |
1ouv_A |
265 |
364 |
128 |
2.68 |
8.59 |
22.033 |
4.609 |
T P |
2if4_A |
258 |
364 |
108 |
2.33 |
7.41 |
21.280 |
4.445 |
T P |
2avp_A |
68 |
364 |
68 |
0.81 |
17.65 |
18.473 |
7.473 |
T P |
2c2a_A |
240 |
364 |
55 |
2.44 |
5.45 |
11.035 |
2.168 |
T P |
2r78_C |
116 |
364 |
43 |
2.32 |
6.98 |
9.103 |
1.776 |
T P |
1wa9_B |
318 |
364 |
49 |
2.82 |
6.12 |
8.855 |
1.676 |
T P |
2v0u_A |
146 |
364 |
40 |
2.23 |
5.00 |
8.185 |
1.718 |
T P |
1d06_A |
130 |
364 |
42 |
2.45 |
2.38 |
7.943 |
1.649 |
T P |
2cmn_A |
117 |
364 |
37 |
2.50 |
5.41 |
7.522 |
1.421 |
T P |
1p97_A |
114 |
364 |
37 |
2.38 |
2.70 |
7.376 |
1.490 |
T P |
1y28_A |
119 |
364 |
35 |
2.30 |
8.57 |
7.237 |
1.457 |
T P |
1xj3_A |
116 |
364 |
36 |
2.46 |
11.11 |
7.208 |
1.405 |
T P |
1lsw_A |
117 |
364 |
33 |
2.48 |
9.09 |
7.047 |
1.278 |
T P |
2b02_A |
111 |
364 |
37 |
2.61 |
5.41 |
6.980 |
1.364 |
T P |
2pdr_A |
147 |
364 |
38 |
2.80 |
7.89 |
6.969 |
1.310 |
T P |
2z6d_A |
118 |
364 |
36 |
2.36 |
2.78 |
6.963 |
1.461 |
T P |
1bv6_A |
119 |
364 |
33 |
2.44 |
12.12 |
6.957 |
1.302 |
T P |
1byw_A |
110 |
364 |
33 |
2.30 |
6.06 |
6.923 |
1.376 |
T P |
2z6c_A |
121 |
364 |
35 |
2.53 |
14.29 |
6.888 |
1.330 |
T P |
3eeh_A |
116 |
364 |
39 |
2.82 |
2.56 |
6.854 |
1.337 |
T P |
2qkp_A |
138 |
364 |
34 |
2.36 |
8.82 |
6.843 |
1.384 |
T P |
2pd8_A |
148 |
364 |
39 |
2.87 |
2.56 |
6.822 |
1.315 |
T P |
3bwl_A |
125 |
364 |
35 |
2.80 |
8.57 |
6.805 |
1.205 |
T P |
3d72_A |
149 |
364 |
37 |
2.71 |
5.41 |
6.757 |
1.318 |
T P |
1v9y_A |
103 |
364 |
35 |
2.41 |
5.71 |
6.751 |
1.392 |
T P |
3f1p_A |
114 |
364 |
37 |
2.71 |
5.41 |
6.740 |
1.317 |
T P |
2a24_B |
108 |
364 |
36 |
2.41 |
2.78 |
6.732 |
1.433 |
T P |
3fg8_A |
106 |
364 |
38 |
2.73 |
13.16 |
6.665 |
1.341 |
T P |
1x0o_A |
119 |
364 |
34 |
2.54 |
8.82 |
6.461 |
1.286 |
T P |
1s67_L |
119 |
364 |
36 |
2.90 |
5.56 |
6.373 |
1.200 |
T P |
2gj3_A |
119 |
364 |
34 |
2.86 |
8.82 |
6.239 |
1.148 |
T P |
2vlg_C |
102 |
364 |
34 |
2.48 |
8.82 |
6.116 |
1.317 |
T P |
1n9l_A |
109 |
364 |
32 |
2.79 |
3.12 |
6.113 |
1.106 |
T P |
2v1b_A |
144 |
364 |
33 |
2.65 |
3.03 |
6.069 |
1.200 |
T P |
1jnu_A |
104 |
364 |
30 |
2.47 |
6.67 |
5.982 |
1.168 |
T P |
3f1p_B |
111 |
364 |
37 |
2.67 |
5.41 |
5.979 |
1.334 |
T P |
3fc7_A |
100 |
364 |
33 |
2.63 |
3.03 |
5.966 |
1.209 |
T P |
2vv6_D |
107 |
364 |
32 |
2.70 |
6.25 |
5.843 |
1.145 |
T P |
2pr5_A |
127 |
364 |
32 |
2.54 |
9.38 |
5.664 |
1.210 |
T P |
2a24_A |
107 |
364 |
27 |
2.63 |
3.70 |
5.194 |
0.990 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]